| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1964 |
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| Symbol | |
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| ID | 5611538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2371589 |
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| End bp | 2373064 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932848 |
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| Product | nitrate/nitrite transporter |
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| Protein accession | YP_001473701 |
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| Protein GI | 157375101 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2223] Nitrate/nitrite transporter |
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| TIGRFAM ID | [TIGR00886] nitrite extrusion protein (nitrite facilitator) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAACG AAGGGAAAAT GAATCTGCTC AACTTTGCAG ATCCTAAAAT TAAAACACTT
CACGTTACAT GGTTTGCTTT TTTCTTAACA TTTGTCGTCT GGTTCAGTCA CGCCCCTCTG
TTAGTTTTCA TCAAAGAGGC TTTCGACCTA ACAAGCGCAC AAGTTAAGGC ATTGCTCATA
TTAAACGTTG CTTTAACAAT CCCGGCACGA ATTATTGTCG GTATCTTAGT CGACAAATTT
GGTCCCAGAA TTATCTACTC TGGACTATTA ATCTCTTCAT CGTTCATCTG TATGGGCTTT
GCAATGGCCC AAAGCTTCGA ACAGCTTGCA TTGTTCAGGT TCCTACTCGG GTTTGTGGGT
GCCGGTTTTG TGATCGGTAT TCGTCTCGTT GGTGAGTGGT TTCCGGCCAA ACAGGTCGGC
ATCGCTGAGG GGATCTATGG TGGTTGGGGT AACTTCGGTT CGGCGGCGGC AGCAATGTCA
CTCCCGACAA TCGCTTATGC GTTTGGCGGC GATGACGGTT GGAGATACGC GTTAGGTCTA
ACGGGTATCA TTGCCGGCCT ATACGGTTTC TTCTTTTACA CCATGGCCCG TAATACACCA
AAAGGCTCAA CTTACTTTAA ACCTAAGAAA TCCGGCGGTT TAGAGGTCAC CAGCAGGAAA
GATTTTTACT TCTATCTGCT GATGAACATT CCAATGTATA TCGCTTTGGC CGTACTCGCA
TGGAAACTAT CTCCATCGGG AGTAAACCTG TTTACGACGC AAGTCATGTA CCTAATGTGG
TTTGGCTTGG TTGCTCTGTT CTTTATTCAA GTCAACTCTA TCTGGCGTGT AAACAAAGAT
AACCTGACTA AAGGAGTTGC AGACATCGAG AAATATGACT TCAAACAAGT CGCTATCTTA
GATGTCGCTT ATTTTGTCAC CTTTGGCTCT GAGCTTGCGG TTGTCTCTAT GTTGCCACTG
TTCTTCTTAG AAACATTCGA AGGCTTAGAT CCGGTAAAAG CGGGTCTGCT TGCTTCAGGT
TTTGCCTTTA TGAATCTGGT CGCACGTCCT ACCGGTGGTT GGTTCAGTGA TAAGTTCGGT
CGCCGCAAGA GCCTGATGAT CTTCATCGGT GGCTTAGCCG TAGGTTACTC AGTATTGAGC
CAAGTTGACG GTGGCTGGCT TATACCTATG GCTGTTATTG CAACCATGTG CTGCTCATTC
TTCGTTCAAG CGGGTGAAGG AGCTGTATTT GCCATCGTAC CTCTGGTTAA GCGTCGCATG
ACAGGTCAAA TTGCCGGAAT GGCCGGAGCC TACGGTAACG TTGGTGCAGT AACCTATCTG
ACCGTACTCT CCTTTGTAGA TTACAGCACC TTCTTTATGG TGATTGCGGC TTCAGCTGCG
GTAATTTTCT TTGCCGTGAT GTTCCTCAAT GAGCCTAAAG GTCATATGGC TGAGGTAAAC
GAAGATGGTA CAGTTGAACT GATCGACGTT AACTAA
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| Protein sequence | MSNEGKMNLL NFADPKIKTL HVTWFAFFLT FVVWFSHAPL LVFIKEAFDL TSAQVKALLI
LNVALTIPAR IIVGILVDKF GPRIIYSGLL ISSSFICMGF AMAQSFEQLA LFRFLLGFVG
AGFVIGIRLV GEWFPAKQVG IAEGIYGGWG NFGSAAAAMS LPTIAYAFGG DDGWRYALGL
TGIIAGLYGF FFYTMARNTP KGSTYFKPKK SGGLEVTSRK DFYFYLLMNI PMYIALAVLA
WKLSPSGVNL FTTQVMYLMW FGLVALFFIQ VNSIWRVNKD NLTKGVADIE KYDFKQVAIL
DVAYFVTFGS ELAVVSMLPL FFLETFEGLD PVKAGLLASG FAFMNLVARP TGGWFSDKFG
RRKSLMIFIG GLAVGYSVLS QVDGGWLIPM AVIATMCCSF FVQAGEGAVF AIVPLVKRRM
TGQIAGMAGA YGNVGAVTYL TVLSFVDYST FFMVIAASAA VIFFAVMFLN EPKGHMAEVN
EDGTVELIDV N
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