| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1953 |
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| Symbol | |
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| ID | 5610345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2357847 |
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| End bp | 2359451 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932837 |
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| Product | nitrate/nitrite transporter |
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| Protein accession | YP_001473690 |
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| Protein GI | 157375090 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2223] Nitrate/nitrite transporter |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.276417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.235717 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGATA TCAAAAAATG GGACGTAGAA GATCCCAAGT TTTGGGACAG TGAAGGGAAG
AAAGTTGCCA ACCGCAACCT TTGGATCTCT ATCCCGAGTT TGTTATGTGG TTTCGCAGTA
TGGCTATACT GGGGCATCAT CACCATTCAA ATGTTGAACC TGGGCTTCCC GTTTGCGAAG
TCTGAGCTGT TCACCTTGAT GGCGGTTGCG GGTTTGACCG GTGCGACATT ACGTATTCCC
AGTAGTTTCT TTATTCGTCT GTGTGGTGGA CGAAATACTA TCGTCTTCAC TACGGCATTG
TTGATGATCC CGGCCATCGG TGCGGGTATC GCGCTGCAGG ATAAGAATAC GCCACTCTGG
GTATTCCAGG TGCTGGCGCT GCTTTCTGGT TTTGGTGGCG GTAACTTCGC TTCATCGATG
TCAAATATCA GTTTCTTCTT CCCTAAGAAG CAGCAAGGTT TAGCCTTAGG TCTTAACGCG
GGTCTGGGTA ACTTTGGTGT AACGACCATG CAGATCTTAG TACCGTTATT TATGACTTTC
GGTATCTTCG GCGGTGAGCC GATGGAGCTG GTTAATACTT CGGGTACCTT GATTGGTAAA
ATTCCTGCGG GTAGTGACGC CTGGATCCAT AACGCGGGTT ACATCTGGTT ACTCTTCTTA
ATTCCGTTAG CGATAGTTGG CTGGATGGGA ATGAATAACA TTAAGGCCTC ACACGTTACG
CCGGATCTGC CAAGCCCAGC GGGGTCTTTT GGTATTATCT CTGGCATGCT TGCCATTGGT
TTTTTGACCT CAATCTTCGG TCTGTGGTTG ATGCTTCCAG AAAAAGTGGG TGGTTCGGGT
TTCGGTGTCA GTAAGTGGAT AGTACTTCCT ATCGTTATCG CACTGACCGT GTTCCTGCTA
AAGCTTATCC CGGGTCAAAT CAAGGGTAAC CTATCTCGTC AGTATAAGAT TTTTAATAAC
AAACACACTT GGGTGATGAG TATCATCTAC ACCATGACCT TTGGCTCATT CATCGGTTTT
GCTGCAGGTT TTGGTCTCTC CATTAAAGTC ATCTTCGGTT ACCAGCATGT GTTGGTCGAC
GGTGTCATGA ATCATGATAT GGCTAACCCC GACGGCCCTA GTGCACTGAT GTATGCCTGG
ATGGGGCCTT TCATCGGCGC GTTAATTCGT CCTGTCGGTG GTTGGATTGC AGATAAGATG
GGTGGCGCTA AGGTGACCCA GATCTGTGCC GTTGTGATGG TCGCGAGCGC AATCGGTGTA
GCTTACTTTA TGCAAGCTGC CTATGCGTCG CCAACACCAC AAGAGTTCTT CGTACCTTTC
TTAGTGCTGT TCCTTATCTT ATTCGCCGCT ACCGGTATTG GTAACGGATC GACATTCAGA
ACCATCTCTA TGGTATTTGA TAAAGAGCAG GCGGGTCCGG TATTGGGTTG GACATCGGCC
GTTGCTGCCT ACGGTGCATT CATTATTCCT AAGGTACTCG GTGAGCAGAT AAAACTGACT
ACACCTGAAA ATGCACTCTA TGGTTTCGCT GTGTTCTATG CAGTTTGTAT CGTCATCAAC
TGGTGGTTCT ATCTACGCCC AGGTGCTGAG CATCATAACC CTTAA
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| Protein sequence | MSDIKKWDVE DPKFWDSEGK KVANRNLWIS IPSLLCGFAV WLYWGIITIQ MLNLGFPFAK
SELFTLMAVA GLTGATLRIP SSFFIRLCGG RNTIVFTTAL LMIPAIGAGI ALQDKNTPLW
VFQVLALLSG FGGGNFASSM SNISFFFPKK QQGLALGLNA GLGNFGVTTM QILVPLFMTF
GIFGGEPMEL VNTSGTLIGK IPAGSDAWIH NAGYIWLLFL IPLAIVGWMG MNNIKASHVT
PDLPSPAGSF GIISGMLAIG FLTSIFGLWL MLPEKVGGSG FGVSKWIVLP IVIALTVFLL
KLIPGQIKGN LSRQYKIFNN KHTWVMSIIY TMTFGSFIGF AAGFGLSIKV IFGYQHVLVD
GVMNHDMANP DGPSALMYAW MGPFIGALIR PVGGWIADKM GGAKVTQICA VVMVASAIGV
AYFMQAAYAS PTPQEFFVPF LVLFLILFAA TGIGNGSTFR TISMVFDKEQ AGPVLGWTSA
VAAYGAFIIP KVLGEQIKLT TPENALYGFA VFYAVCIVIN WWFYLRPGAE HHNP
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