| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1952 |
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| Symbol | |
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| ID | 5610344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2355702 |
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| End bp | 2357477 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932836 |
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| Product | two-component sensor NarX |
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| Protein accession | YP_001473689 |
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| Protein GI | 157375089 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3850] Signal transduction histidine kinase, nitrate/nitrite-specific |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.107015 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.49675 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAACA ATGAAGTTGG CGATATGAAA ATAAAACAAA ACCTGGGCGA ATCACTCTAT
ATCGATGAGC CAACGAGTAG CTCATCACTC GTTGCCTCCG CCGGACAATT TATGGCCATT
ATTATTACTT TGGGCCTGTT TAGCATGATC TCTTCGATCT TAGTGGCCGA GAGTCTCAGC
GGTGATGCCG AACGGATTAA TCGAGCCGGC TCGATGAGGA TGCAGGCAAT ACGGGTTTCA
CGCGCTAATT TGATAGATCA AGATGGTAGC CGGCCCATCC TTTCTCAAGA GATCCAGGTA
TTTGAAAACA AATTGTCGCA TCTGTTCTTC GGAGGGATAG CCAGTACCAT AGATGACCCG
GAAGTGATCG CTCAGCATCA AAAAATATTG TCATCGTGGG ACGCAATAAA GCAATCTCCC
CAAACCACGT CAGTCGAAGA TTTCGATCGC TTTACCATCA AAATAGACAA GCTGGTTAAC
TTGTTACAGA TGGAATCGGA GAAAAAATTA AGCTTATTAC GGTTAATTCA GGGGATCACA
CTCTTTTCAA TTCTTATCGT CAGTGCCTTG GTATTATTCA AACTCAACCG CTCGCTGATA
ATACCGCTTA AACAGCTGGT CAGAGTCGCC TCAGAAGCGG GTAAAGGTAA TTTTAATATC
AAGGTAGACC ATATCGCCGA CAATGAATTG GGTCTGCTAT CCCGCACCAT CGCTCATATG
TCGAAACAAC TTGAGAATAC CTATCAGGAA TTTGAAGACC GGGTAGATAA AAAGACTCAG
GAACTCACCC AGAGTAACCA GTCACTCGAG GTCTTGTATC GCGCAGCAAG TAACTTATCT
AACTATGAAT ATCATCAGAT CGATCAGAAG ATAATTCAGG AACTGGTACA AGTACTTGGT
TACGGAAAGG TCTCGATCGT GCTCTGTGAA AAGAGTATTA ACAATCTTAC TTTTTATAAA
GCCAAAACCA ACACCATAGA TCACCAATAT ATGGATGTTC ACCAGTTTGT GTTAGAGAAA
CGGGGCCGTT TTTTTGGCGA TATCGTCTGG CAGGTGCCTA AACATGAAAC GCCTGAAGAC
TGGCAGAAAC AACTGCTTCA AGCCATGGCC GACATAGTCG CCACCGCCAT CGAACTGGAG
CAGAAGAAAA ACACCGAAAA CAGGTTACTC ATTGCCGAGG AACGTGCCGT TATCGCCAGA
GAACTGCATG ACTCTCTTGC CCAGTCCCTC TCGTTTCTTA AGGTTCAGAT GAGTCTGTTA
ACGCGAAAGA TGCAAAAAGG GCTCCCCGAA GAACAGGTCA ATGAAACCAT CAATGATATT
AAACAGGGGT TAAATCATGC CTACCTGCAG TTACGGGAAT TACTTACCAC CTTCAGGCTC
AAACTCGATG ATCCCTCTTT GGAAAATGCC CTGCAAGGTA CCGTGGCCGA GTTTGCCGAA
AAGTGCCAAC ATGCCATTGA ATTAAACTTT GAAATACCGC AAAATTATCT GACAGCAAAT
CAAGAAATAC ACGTACTGCA GATCATTCGA GAGAGTTTAT CGAATGTACA CCGGCACGCA
GAAGCAAGCT TAGCCGGAGT CAATCTGATT AAAGAAGATG ACAAGATAAA ACTGGCAATT
TGGGATAATG GTAGGGGTCT GCCAAGTAAC CTTGAGCAGC AAGGTCACTT TGGTTTAGGT
ATCATGAAAG AACGCGCAAA ATCGCTAAAC TCTGTCCTGG CCTTTGAACC CAACTCACCT
AGCGGCACTA AGGTGCTGCT GGAGTTTATA CATTAG
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| Protein sequence | MVNNEVGDMK IKQNLGESLY IDEPTSSSSL VASAGQFMAI IITLGLFSMI SSILVAESLS
GDAERINRAG SMRMQAIRVS RANLIDQDGS RPILSQEIQV FENKLSHLFF GGIASTIDDP
EVIAQHQKIL SSWDAIKQSP QTTSVEDFDR FTIKIDKLVN LLQMESEKKL SLLRLIQGIT
LFSILIVSAL VLFKLNRSLI IPLKQLVRVA SEAGKGNFNI KVDHIADNEL GLLSRTIAHM
SKQLENTYQE FEDRVDKKTQ ELTQSNQSLE VLYRAASNLS NYEYHQIDQK IIQELVQVLG
YGKVSIVLCE KSINNLTFYK AKTNTIDHQY MDVHQFVLEK RGRFFGDIVW QVPKHETPED
WQKQLLQAMA DIVATAIELE QKKNTENRLL IAEERAVIAR ELHDSLAQSL SFLKVQMSLL
TRKMQKGLPE EQVNETINDI KQGLNHAYLQ LRELLTTFRL KLDDPSLENA LQGTVAEFAE
KCQHAIELNF EIPQNYLTAN QEIHVLQIIR ESLSNVHRHA EASLAGVNLI KEDDKIKLAI
WDNGRGLPSN LEQQGHFGLG IMKERAKSLN SVLAFEPNSP SGTKVLLEFI H
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