Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1951 |
Symbol | |
ID | 5610343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2354966 |
End bp | 2355607 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640932835 |
Product | putative nitrate/nitrite response regulator; NarL |
Protein accession | YP_001473688 |
Protein GI | 157375088 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0120802 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.965323 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTACAG CACAAATATT ACTGGTTGAT GACCACCCCA CTCTGCGCCA AGGTTTGGCT CAACTTATCT CCTTAGAAGA TAACCTGGAC GTTGTCGCAC AGGCAGGCTC GGGGGATGAG GCGATAAGCC TTGCCATAAA GCATTCACCG GATCTGATTT TACTCGATCT CAACATGAAG GGCTTAAGCG GCATAGACAC CCTAATCGCC CTTAAACGCG CCGAAGTGCA GAGTAAAATC GTCATCTTCA CCGTATCAGA CAGTGAAAGT GATGTGTTGC AGGCCATCAA GTTCAATACC GATGGTTACC TCCTGAAAGA CTCGGAGCCA GAAGAGCTTA TCGAGAAAAT CAATCTCGCC ATCCAGGGGG AGTTTGTGAT CAGCAACCCG CTAACCCAGA TCATGGCAAG ATCGTTGAGA CCCAACAGTA AGAAAGTCTC ACCACTTGAA AGCCTCACCC AACGTGAGCT GCAAAACCTC AAGCTTATCG CCGCAGGCAA GAGCAATAAA GATATCGCCA ACAAGCTCGG CATCGCCGAG ACGACGGTCA AGGTTCACGT GAAGAACCTG CTTAAAAAGC TGGGCTTAAA GAGCCGGGTC GAGGCGGCGG TATGGGCGGT GGAGCATAAG ATCAGTCATT AA
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Protein sequence | MTTAQILLVD DHPTLRQGLA QLISLEDNLD VVAQAGSGDE AISLAIKHSP DLILLDLNMK GLSGIDTLIA LKRAEVQSKI VIFTVSDSES DVLQAIKFNT DGYLLKDSEP EELIEKINLA IQGEFVISNP LTQIMARSLR PNSKKVSPLE SLTQRELQNL KLIAAGKSNK DIANKLGIAE TTVKVHVKNL LKKLGLKSRV EAAVWAVEHK ISH
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