| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1922 |
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| Symbol | |
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| ID | 5612910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2311193 |
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| End bp | 2312251 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932808 |
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| Product | putative secretion protein |
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| Protein accession | YP_001473661 |
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| Protein GI | 157375061 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.350585 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACCAG ATCAAAAATT TGCACGCTGG ATAAAGATAT CAATGTTACT TTTTGTGATG
ATATTTTCAT ATTTTATTTT AGCCGATTTT AACATGCCAC TGACTCAACA GGCGATGGCA
ACCAGGGATG TGACTAAGGT TGCCCCTAGG ATTAATGGGC CAATCGTCGC AATCAATGTT
AAAAATAACC AAGTGGTAAG CAAAGGGGAG GTCCTGTTTT ATATCGATTC GACCCCCTAC
CAACTTAACG TAGAGAAAGC GGCGTTAAAC CTGGAGCAGA CGCGAAAATC CAATGAAGAG
CTGGATGCAT CTTTGGCGGC TGCGGCGGCC GAGGTCAAGG CCAGCAGCAT CATAGCGCTG
CAGAAGCAGG CCGATGCCAA GCGGGTTAAC TCTCTGTTCG ATCGTAATGG CGTCTCACAG
CAGCAAAAAG ACAGCCTGGA AAGCGATGCG ACGGCTGCGA AAGCGAACCT ACTGGCAAGT
AAAGCCCGCC TGAAAGAGTT AACGGTACGT CGTGGCGAAC TCGATGAAAA CAACGTGAAT
CTACGCGTCG CGTTGAATCA GCTTAAACAA GCAAAGTTAA ACCTGTCTTA CACTCAGGTC
AGAGCCAAGC AAGATGGAAC AGTGACCAAT CTTCAGCTTC AGGCCGGAGC CTACGCCAGC
GCCGGACAAC CTCTGCTCGC GCTGGTCTCA TCAAAGATAG ATATCATCGC CGATTTTCGT
GAGAAGAGTT CACGACGAGC ATCCAATGGC AGTCGCGCTT TGGTCGCCTT TGACGGCGAA
CCTGGACAGT TATATACGGC CCTTATTTCG AGCATGGATG CGGGGGTGAG CGTGGGCCAG
TTCGATGCCA ATGGCCAACT GGCAACGCCG ACAGAATCTA ATCGATGGGT TCGTGATGCC
CAGCGCATGC GTCTGCACCT TGATCTTGAC GTTCCTTATC CCGACATCTT GCCATCGGGA
GCCCAAGCCA CGGTTCAGTT ACTTCCTGAT AATGCCGTCT TTTGTCTGCT TGCAAAAGTT
CAAATTAACC TGCTGAGTTA CCTGCACTAT ATCTACTAA
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| Protein sequence | MTPDQKFARW IKISMLLFVM IFSYFILADF NMPLTQQAMA TRDVTKVAPR INGPIVAINV
KNNQVVSKGE VLFYIDSTPY QLNVEKAALN LEQTRKSNEE LDASLAAAAA EVKASSIIAL
QKQADAKRVN SLFDRNGVSQ QQKDSLESDA TAAKANLLAS KARLKELTVR RGELDENNVN
LRVALNQLKQ AKLNLSYTQV RAKQDGTVTN LQLQAGAYAS AGQPLLALVS SKIDIIADFR
EKSSRRASNG SRALVAFDGE PGQLYTALIS SMDAGVSVGQ FDANGQLATP TESNRWVRDA
QRMRLHLDLD VPYPDILPSG AQATVQLLPD NAVFCLLAKV QINLLSYLHY IY
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