| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1919 |
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| Symbol | |
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| ID | 5612907 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2308588 |
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| End bp | 2309331 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932805 |
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| Product | amino acid ABC transporter periplasmic protein |
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| Protein accession | YP_001473658 |
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| Protein GI | 157375058 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0371115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGGAA GTAGCGATTA TGTGAGCCTC CAATGGCTGA GTGCTATAGG GTTGAGTTTA
TTAATCAGCT TGAGTGTGAG GGCCGAGACC ATTGAGGTGT TAACCTATGA AGAGTCTCCA
TTCGCGGTGA AAGTAGGTAA AACTCATCAC GGCTTATTAG TCGACATGCT TAAAGAGATG
TTTTCACGAA CCTCACTCGA CTATAAACTC AGGTTTATTC CTTTGAAAAG GGCGATCGTC
ACTACAGAGC GAATGCCTGG TCACTGTGTG TTGCCGGTCG CCAGAAGTCA GGAACGAGAG
GCCCACTTTC ACTGGATAAG CCCGGTGTTA GTGTCAAGGT ACGGGCTTTT CAGCCGCAGC
AATCAAACTA TTCCGCTGAC CAGTTTAAGT GATGCAAAGC CCTATAAAAT CGGCAGTTTT
CTGGGCAGTG GTATCGGTGA GTATTTAACA GACTTAGGTT ATGATGTGGA GTTGGCATCG
GTCAGTGCAC AAAATTTACG TAAGCTTAAA CGAGCACGTA TAGAGCTTTG GGCGGCAGAG
CTTGTCAGCG CCCAGGAACA GATGCAGAAG CAGGCGATAA ATTTTGGTGT GCCAGAACTG
ATTTTCTATA CTTCTCTGCG CGCGATGGCG TGTAATAAAG AGATGCCGCG TGAACAAACT
TTAGCGTTAG AAAATGCCCT TAAGTCTATG TATCGGGACG GCTATATGAG TCGCCTCTAC
CTCGAGTATG GAGTTAAAAT TTAA
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| Protein sequence | MFGSSDYVSL QWLSAIGLSL LISLSVRAET IEVLTYEESP FAVKVGKTHH GLLVDMLKEM
FSRTSLDYKL RFIPLKRAIV TTERMPGHCV LPVARSQERE AHFHWISPVL VSRYGLFSRS
NQTIPLTSLS DAKPYKIGSF LGSGIGEYLT DLGYDVELAS VSAQNLRKLK RARIELWAAE
LVSAQEQMQK QAINFGVPEL IFYTSLRAMA CNKEMPREQT LALENALKSM YRDGYMSRLY
LEYGVKI
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