Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1910 |
Symbol | |
ID | 5611158 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2295871 |
End bp | 2296641 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640932796 |
Product | amino acid ABC transporter periplasmic protein |
Protein accession | YP_001473649 |
Protein GI | 157375049 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0380327 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAAC TTCATGTTCT TCTATTTCTG ATGATCAATC TGTTATTGCC AGCAGAGGGA GCTGAGCTTA AGTTTGTCAC TCATGACTTT CCTCCTTTTA GTTATGAAAG TGGCGGGACC CTATCGGGAG CGGCTATCGA TATTGTGCGT CAAACATGCA GCGAGATAGA GATAAGTTGT CCCATCGAAC TCTTACCCTG GAAACGATCG CAATTTAAAG TCAGGCGGGG GCATGTGCAA GCAATGCTGG TGATAGGATG GAATAATAAA CGAGCTCAAT GGCTATCTTT TTCACCTCCA CTTTTAAAAA CTCAGTATGG ATTCTTCGTT AACAGATCTA ACCCGCTAGA TTATCTGTCA CTCTCAGACC TAGCCGGGGC TAGAGTCGGT GTATTGGAAT CTTCTAATAC CTTTAGCCAT CTAACTAAAA TCCGTCAGCA GATGATTGAG TCAAACCTTA AACCTATCAG TATTCAGGGG ATCCATGACA ATAATCTGGT GTTTAAGATG CTAGATAATG AAGGTCGAAA CATAGAGATG ATCTACTCCA ATAGAGATGT CGGTAATACA TTAATTGTTA ATAATAATTT GAAAAATGTT CGTTATGCCG GCCCGAATGA AGAGTTGTAC TATTATATCG GCTTTGGCCG TAAGCATGCC GACAAGGAGC TGGTAGAGCG CTTCAATAAC GGTTTTATGA AGTTACAACA GGCAGGCGTC ATTCAAGATA TTTTAGCCCA ATACAATCTG GAGGGAGTTG AGCCCGATTG A
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Protein sequence | MNKLHVLLFL MINLLLPAEG AELKFVTHDF PPFSYESGGT LSGAAIDIVR QTCSEIEISC PIELLPWKRS QFKVRRGHVQ AMLVIGWNNK RAQWLSFSPP LLKTQYGFFV NRSNPLDYLS LSDLAGARVG VLESSNTFSH LTKIRQQMIE SNLKPISIQG IHDNNLVFKM LDNEGRNIEM IYSNRDVGNT LIVNNNLKNV RYAGPNEELY YYIGFGRKHA DKELVERFNN GFMKLQQAGV IQDILAQYNL EGVEPD
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