| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1904 |
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| Symbol | |
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| ID | 5610800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2288603 |
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| End bp | 2290330 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932790 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473643 |
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| Protein GI | 157375043 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0068] Hydrogenase maturation factor |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00409479 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAATA TTAGGTTTGA ATTTACCTGT TCGAAACAGG TTCCCCTTTA TGCGCACCTG
TGTAATCAAT ATCTTAATCA TGACCAGCTG AATATCACTG TAGGTTATCA GGAGCAGGTC
TATTTTATCG AGGCCCAGGG TGAGTTAAAG GAACTTGAAT CCCTCGCCGA TGCAATTGCA
CAAGATTTCC TTATTTCTGT GTGGCTAACA GATTCACGCA TATCTCTGAT AGATTCACGT
ATGGGTAGCC ATCAACTATT ACCCGATGCC AAGGTAGAGC AGGAATTTTG TCAACAGTGC
CTGCCACTGT TCGGTGATAA CCAATCTCCT CTGTTCGGCG ATATCTCCTT GAAGTGCGAC
TGTTGCCATG GCCGAACCCG TCTCCATGAA AAGCATTTGG GCCTCTCCTA TACCGATATT
GTTTCAATTG CAGATTCCTT ACTGAGAGAT GGCGAAGCTC AACTTCCAAA TAAAGATACC
ATCACATTCA GTCTTTCACC TTTAAGCAAT ACGGGCCGGG ATAAGCTACT TATCTGTAAT
CCCAATACTC TCAACGCCCA GTTCCACCTC AAAGATCATC AAATCTTAGC CCTGTCGAGC
ATTGAAAAGC CATTAATCAC CGCCCGCCCG GTTAACGATC ACCCAAAACT GGATGCGCCT
CTTTACGATA TCTGCTTTGC CTATAATCGC GCCGTGGTCG TTCTGTGTGA AATATTAAGG
CAGAAAGGGA TCGATTGGGT CTACTTTCAT GCCGACAATC TCAGCAAACC TATGGTTTGG
ATCCAATCGG CATGGAGTAA AATATCCAGT GAAATCGACA ATAACGACCC CGTTGTCGTT
TTAGAAAATG CCCCGGAACC TCTGCACGAT GAGGCGAGTT TCAATGGCGT AGTCGCAAGG
TGGAAGAAGG GACTGATCAA CTGTTCTCAG TCGGATACAG AAGGAACTGG TGGCGAAAGA
AGCGACGCCG GGATCTGTGC CCTTCACGCA GGAAATCTTG AGAGTGGTCA GTTTAAAAAT
AGCGCTGTGA TCTACTTTAG CCAGGAGCAG ACTGGCCAGA TTGTGACTCA AGACAGAGAT
CAAAAATCTG AGTTATTCTT CTCTCTGCCA GCGCTTCCGA CCACAGGTTA TGACATCTAC
CATCACCTGG AACAGAGCCC GCAACGTGGC GTGGTTGAAA AGTTTAAACA GAAATATCCG
GATGATTACC TCAGACTTCT GGATCTGAAT TTAGCCTCGC CAACGGATAA CCTACAGAGC
CTTTGGGCTA TTGCGGCGAT CATCCTTGGG CTGCCAACCA AGGCCTTGAC TAAAGATGCA
CTTTCCGATG CCTTAATCAG TTGCGCCATG GCTCACAGAG GGTCTAACTC ACCTAGAATC
GATTATCCCC TCACTAAAGG TGAAGCACAT CGAAGCTTGA ACTGGTGTAA AACATTGGGG
TCACTGATAA GTTTCCGATT AGCCGATGAT AGAGACTCAT ATAAGCTAGC ATTCGGTATG
CAGGATTCAC TGGCCGACTT TTTGGCGAAC TGGATTGAAC ATCTGGATCT TAATATTGGG
GTCAATTCGG TCATATTAGC CGGTAGTGAA TTTGCCAACG AAGTGCTAAC TCAAAGGTTA
TCTCTGAGAC TCGGTAAAAA TTTCCCTCTG AAAATCAATC ATAGACTGGA TCTCGATGGT
AACAACCTTG CCGTTGGCGG GCTTTACCTT AAAAAGCGAA GACAGTAG
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| Protein sequence | MKNIRFEFTC SKQVPLYAHL CNQYLNHDQL NITVGYQEQV YFIEAQGELK ELESLADAIA
QDFLISVWLT DSRISLIDSR MGSHQLLPDA KVEQEFCQQC LPLFGDNQSP LFGDISLKCD
CCHGRTRLHE KHLGLSYTDI VSIADSLLRD GEAQLPNKDT ITFSLSPLSN TGRDKLLICN
PNTLNAQFHL KDHQILALSS IEKPLITARP VNDHPKLDAP LYDICFAYNR AVVVLCEILR
QKGIDWVYFH ADNLSKPMVW IQSAWSKISS EIDNNDPVVV LENAPEPLHD EASFNGVVAR
WKKGLINCSQ SDTEGTGGER SDAGICALHA GNLESGQFKN SAVIYFSQEQ TGQIVTQDRD
QKSELFFSLP ALPTTGYDIY HHLEQSPQRG VVEKFKQKYP DDYLRLLDLN LASPTDNLQS
LWAIAAIILG LPTKALTKDA LSDALISCAM AHRGSNSPRI DYPLTKGEAH RSLNWCKTLG
SLISFRLADD RDSYKLAFGM QDSLADFLAN WIEHLDLNIG VNSVILAGSE FANEVLTQRL
SLRLGKNFPL KINHRLDLDG NNLAVGGLYL KKRRQ
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