| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1902 |
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| Symbol | |
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| ID | 5610825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2285387 |
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| End bp | 2286145 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932788 |
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| Product | hydrogenase accessory protein HypB |
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| Protein accession | YP_001473641 |
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| Protein GI | 157375041 |
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| COG category | [K] Transcription
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0378] Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase |
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| TIGRFAM ID | [TIGR00073] hydrogenase accessory protein HypB |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000389713 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTGTAAAG ATTGCGGCTG TTCACTGACT CGTCCCTCCC ATGGCGAGCA TTCCCATGAC
CATGAACATC ACACTCACGG CGATCTACAT AGTAATCCCC AACTGAATGA TAAGAAAACC
TTAGCGGTTA TCCATAAAAT ACTCGATAAA AATGATATTG AAGCCGCCCA TAACAGAGAA
CATTTTGAAG CTAATGGCGT CACGGCCTTC AACTTAATGA GTAGCCCGGG TAGCGGTAAG
ACAACTTTGC TTGAAAATCT CCATGAATAC ACAGATCTCA AATATGCTGT TATCGAAGGC
GATCTCGAAA CATCGCGCGA TGCTGACAGA TTAAAAGCCA AAGGGATCGA CGCTTATCAG
ATCCAAACCG GCTCGGCTTG TCACCTCGAT GCCTTTATGG TCCATGGTGC CCTGCATCAT
GTTGAACTCA ACGATCTCGA TATCTGCTTC GTGGAAAACG TCGGTAACCT CGTCTGCCCG
GCCTCGTATG ATGTGGGTAC CCACCTCAAT GTCGTCCTGG TATCGGTACC TGAAGGCGAT
GATAAAGTTG AGAAGTATCC GGTTATGTTC CGACGCGCCG ATCTTATCTT GATCACAAAG
TGCGACCTAC TCCCCTATTT TGATTTCAGT GTCGAGGAAG CCCGCGCACA GGTTAAGAAG
CTCAATCCTG AAGTTGAGGT CATTGAGGTC TCTATTAAGG ATGGCGACTC GATGACTCAA
GTTGCTAACT GGCTAAAAAC TCACCGTAAA GGAGCGTAA
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| Protein sequence | MCKDCGCSLT RPSHGEHSHD HEHHTHGDLH SNPQLNDKKT LAVIHKILDK NDIEAAHNRE
HFEANGVTAF NLMSSPGSGK TTLLENLHEY TDLKYAVIEG DLETSRDADR LKAKGIDAYQ
IQTGSACHLD AFMVHGALHH VELNDLDICF VENVGNLVCP ASYDVGTHLN VVLVSVPEGD
DKVEKYPVMF RRADLILITK CDLLPYFDFS VEEARAQVKK LNPEVEVIEV SIKDGDSMTQ
VANWLKTHRK GA
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