| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1893 |
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| Symbol | |
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| ID | 5613835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2278750 |
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| End bp | 2279526 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932779 |
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| Product | putative transcriptional regulator |
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| Protein accession | YP_001473632 |
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| Protein GI | 157375032 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000476135 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAA ATACCGCTGA CTTTGATCCG GACCGGTCTC TTCTCGATGT TGTAGGTCTC
AGGCAAGATG CCATTAAGCC CGCCGATGAA CTGCCCGTTC ATACCCATCA AAAAGGTCAA
CTGATCCTCG CCCTGCATGG CTACATAACC TGTGAAATAT CCGATGCAAT ATGGATAGCA
CCTCCCCAGA GTGCGGTCTG GATCCCGGCC GGGTTCCCTC ACAGCAACAA GGTATCCGGT
GATGCCTCCC TGTGTCTGCT TTTTATCGCC CCTCATGTGG CTCATTTACC TTCACGAAGC
TGCACCTTGT CAATCTCTCC TCTGTTAAGA GAGCTCATTA AACACTTCTC TCAACTACCT
CAGAGTTATG AAGCTGGTGG TCCCACCGAC TTGTTAGTCA AGGTTCTGCT ACACGAACTG
ACTCAGATGC CTACGAATCA ACTGGAATTT CCGATATCGC AAAATAGTAA ATTAAGAAAA
ATAGCTGAAT CATTGATGGC GTCGCCAAAT GACAGGAGTA CGGTGGCGCA GTGGGGCTCG
CGCTATGCCA TGAGTGAACG AACTCTTACC AGGTTAATCA AAAAAGAGAC GGGAATATCA
TTCGGAAGGT GGAGAACACA ATTACATATT ATTATTGCCA TACAGCGACT ATCGAGTCAT
CGCAGCGTTC AACAGGTCTC GGAAGAACTT GGTTATGAGT CTGTCAGTGC ATTCATCACC
ATGTTCAAGA AAAAATTGGG CGAGTCACCC AAACGTTATG TGAATCAAAG GGAGTAA
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| Protein sequence | MKKNTADFDP DRSLLDVVGL RQDAIKPADE LPVHTHQKGQ LILALHGYIT CEISDAIWIA
PPQSAVWIPA GFPHSNKVSG DASLCLLFIA PHVAHLPSRS CTLSISPLLR ELIKHFSQLP
QSYEAGGPTD LLVKVLLHEL TQMPTNQLEF PISQNSKLRK IAESLMASPN DRSTVAQWGS
RYAMSERTLT RLIKKETGIS FGRWRTQLHI IIAIQRLSSH RSVQQVSEEL GYESVSAFIT
MFKKKLGESP KRYVNQRE
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