Gene Ssed_1874 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1874 
Symbol 
ID5609728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2261121 
End bp2261540 
Gene Length420 bp 
Protein Length139 aa 
Translation table11 
GC content46% 
IMG OID640932760 
ProductMarR family transcriptional regulator 
Protein accessionYP_001473613 
Protein GI157375013 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000119555 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
TTGAAACAGT ATGAAAGCCT CGGGTATCTG GTGTCGCATT TGAATATTGA TCTACAAAAT 
GCATTGGATC AAAAACTCAA ACGTTACCAA CTCGATATAA AACTCTGGCC GGTTCTTTTT
GCCTTGTGGC AAGAGGAGGG GATCACACAG ACTGAGTTAT CTAAACGGTG CGACGTTGCA
CATTATACGA TGACACGCTT GCTCGACCAA CTACAGGTAC AAGGCCTGGT TACCCGCCAT
CAAGAAGCTG ACAATCGTCG CGCATTTCAC ATTTTTCTTA CCGATGCCGG AAAGGCGTTA
GAGCAAGATC TTGTGATCGA AGCCGAGCGA GTCAACGCCA ACTTTCTTGA TAACCTCTCG
GGTGATGAGC GCTTAGCCCT TATGGCCTTA CTCAATAAAA TTAATCGATT CCCCGAATGA
 
Protein sequence
MKQYESLGYL VSHLNIDLQN ALDQKLKRYQ LDIKLWPVLF ALWQEEGITQ TELSKRCDVA 
HYTMTRLLDQ LQVQGLVTRH QEADNRRAFH IFLTDAGKAL EQDLVIEAER VNANFLDNLS
GDERLALMAL LNKINRFPE