| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1874 |
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| Symbol | |
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| ID | 5609728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2261121 |
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| End bp | 2261540 |
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| Gene Length | 420 bp |
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| Protein Length | 139 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932760 |
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| Product | MarR family transcriptional regulator |
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| Protein accession | YP_001473613 |
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| Protein GI | 157375013 |
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| COG category | [K] Transcription |
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| COG ID | [COG1846] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000119555 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | TTGAAACAGT ATGAAAGCCT CGGGTATCTG GTGTCGCATT TGAATATTGA TCTACAAAAT
GCATTGGATC AAAAACTCAA ACGTTACCAA CTCGATATAA AACTCTGGCC GGTTCTTTTT
GCCTTGTGGC AAGAGGAGGG GATCACACAG ACTGAGTTAT CTAAACGGTG CGACGTTGCA
CATTATACGA TGACACGCTT GCTCGACCAA CTACAGGTAC AAGGCCTGGT TACCCGCCAT
CAAGAAGCTG ACAATCGTCG CGCATTTCAC ATTTTTCTTA CCGATGCCGG AAAGGCGTTA
GAGCAAGATC TTGTGATCGA AGCCGAGCGA GTCAACGCCA ACTTTCTTGA TAACCTCTCG
GGTGATGAGC GCTTAGCCCT TATGGCCTTA CTCAATAAAA TTAATCGATT CCCCGAATGA
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| Protein sequence | MKQYESLGYL VSHLNIDLQN ALDQKLKRYQ LDIKLWPVLF ALWQEEGITQ TELSKRCDVA
HYTMTRLLDQ LQVQGLVTRH QEADNRRAFH IFLTDAGKAL EQDLVIEAER VNANFLDNLS
GDERLALMAL LNKINRFPE
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