Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1856 |
Symbol | |
ID | 5611712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2232746 |
End bp | 2233705 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932732 |
Product | TolA family protein |
Protein accession | YP_001473595 |
Protein GI | 157374995 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3064] Membrane protein involved in colicin uptake |
TIGRFAM ID | [TIGR02794] TolA protein |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0299684 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.827846 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACAGATA AAGCAAATTT TACGTTACCT CTGGTGATTT CAGCTGGCAT TCATATTGGC GTGTTAGTTA TTCTCGCATT GGGTGTCGAT TTTTCTGAAC CCCCAAAACC TCAGCCACAG GCGAGTGCCC CTGCTGTACA AGCCGTTGTG GTGGATCAGA AAAAAGTGGC TCAGCACGTT GAGAGACTTA AAGCCGAAAA AAGAGAAACT GAGCGCAAGG AGAAAGCCAG ACAAGATGAT TTAGAGCTTA AGGCGAAGGA AGCTCGCCAG GAGCGAGAGC GTGAACAGGC TCAAATTAAA AAGCTCGAAA AACAACGTAA GCAAAAAGAG ATAGAAACGA AAAATGCCGC AGCGGCTGCA AAGGCGGCTC AATTAAAAGA GAAGCAAGCC AAGGATAAAG CACAAAAAGC AGAAGCTGAC AGAAAACAGA AAGAGAAAGA ACGCAAAGCC TCTGAAGTGG CAGCAAAAAA AGCCGCTGAA AAACGTAAGC AGGAAGAAGC TGCGGCGAAA AAAGCAGCCG ATGAGCGTAA GCGTAAAGAG GAGGCGGAAC GCAAACGTAA GGCTGAAGCC GAGCGTAAGC GCAAAGCTGA GGAGCAGGCT CGTCAACAGC AAGAGCAGAT GATGCAAGAT GCCTTAGCTG CCGAGCAGGC CGCACTGTCT CAGACACGTA ATAAGCAAGT AATGACTGAA GTTCAGCGTT ATACCAGCAT GATTAGGGCG ACTATTCAGC GAAACCTTGT TGTCGATGAG TCGATGCGAG GTAAGAGCTG TCGTATATTT ATTCGTTTAG CGAATGACGG GTTTGTCACC GCCAATAAAA TATTGTCGGG TGATCCGGTT GTATGCCGAG CGACTAAAAC GGCGATAAAT AAAGCCGGTC GGTTGCCTGT GTCGAGTGAG CCAGATGTTT ATAACAAATT AAAAGAGATT AATTTAACTG TTCAACCTGA ATTTAATTAA
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Protein sequence | MTDKANFTLP LVISAGIHIG VLVILALGVD FSEPPKPQPQ ASAPAVQAVV VDQKKVAQHV ERLKAEKRET ERKEKARQDD LELKAKEARQ EREREQAQIK KLEKQRKQKE IETKNAAAAA KAAQLKEKQA KDKAQKAEAD RKQKEKERKA SEVAAKKAAE KRKQEEAAAK KAADERKRKE EAERKRKAEA ERKRKAEEQA RQQQEQMMQD ALAAEQAALS QTRNKQVMTE VQRYTSMIRA TIQRNLVVDE SMRGKSCRIF IRLANDGFVT ANKILSGDPV VCRATKTAIN KAGRLPVSSE PDVYNKLKEI NLTVQPEFN
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