| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1852 |
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| Symbol | |
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| ID | 5611922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2228909 |
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| End bp | 2231065 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932728 |
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| Product | prolyl oligopeptidase |
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| Protein accession | YP_001473591 |
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| Protein GI | 157374991 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1505] Serine proteases of the peptidase family S9A |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0419328 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.988399 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGTAT TTAAATCAAT ACTTAAAAAA CAGCACATTT TAATGGCTGG AGTCGGCATC
GCGTTAATGG GGTGTCAGGC AACGACGACT GAGAAGCAAG TCTCATCTCC TCAAATTCCC
TCGCCGGCAA GCACGATAGA GACAATACAC GGTGTACAGG TCGCGGATCC GTATCGTCAC
CTCGAAGTGG AGTCTGAGGA AACGACAAAC TGGGTAAAAG CGCAACAGGC CGATGGGCAT
GCCTATCTGG CAGGAATTAA AAATAAGCAA GCGATTGTCG ACCGTATTAC CGAGCTTTGG
AATTATGAAA AAGTGTCAGC GCCTTTCGAG CACGGTGATA ATACTTTTTA CTATCGAAAT
GATGGCCTCC AGGCTCAATC AGTTTTGTTT GTAAAGGGAG CGGATGGGAA AGAGAAGGTA
CTTCTCGATC CGAATACGCT TTCTTCTGAC GGTACGGTTG CCTTATCAGG GGTTTCCGTC
AGCGGCGATG GTAATACCTT AGCTTATGGT GTTTCAAATT CTGGTTCAGA TTGGCAGCAA
TGGCAATTTG TCGACATTGC CAGCGGAACT AAGTTAAATG ACGAACTTAA GTGGATTAAG
TTCTCGGGTG CCGAGTGGAG TAAGGATAAC GGTGGCGTCT ATTACGCACG GTATGATGCA
CCCGCCGGCG GTAACCTGCT TGCCGATGTG AATTTTAATC AGAAAGTGTA CTTTCATAAA
ATAGGTACCG ATCAGAGTCA GGATAAACTG GTCTATGAGC GGCCACAGAA TAAAGATTGG
GGCTTCGGAA TCGAAGTGTC TGAAGCGGGT GACTACCTGT TGCTATCCAT CTCTCAGGGA
ACGGATAGTC GTAACCGCTT TTTCTACAAG AGCCTGGAGA AGGACGCTGA TGTCGTTGAG
CTTATCATCG ATCTGGAAGC TGAATATAGC TTCCTGGGAA ATGACAAGTC GATTTTTTAC
TTCAAAACGG ATCTCGATGC ACCGAATGGT AAAGTCATTG CGATAGATGT GAATAAGAGT
GATAAGTCTA ATTGGCACAC GATAATTCCT GAGTCTACCG ATCCCATAAG CAGTATCTCG
ATTATTAACG ACCATCTGGT TGTCAGTTAT CTGCACGATG TACTAGGCAA GCTCTCTATC
TTCAGTTTGA GCGGTGATAA GAGACAAGAT GTGACTCTCC CCGGAAAAGG TAAAGTTGCC
GGTCCCTATG GGAAGCGCAG CAAAGACTAT TTCTATTATG TCTTTAATAG TTATGCTCAA
GCCAAAACGA CTTACCGATT TGACTTTAAG ACGGGCAGCT CGACCTTATT TACCGAACCC
AAAGTGTCAT TTAACCCCGA TGATTATGTC TCGGAGCAGG TTTTTTATAA CAGCAAAGAT
GGCACTCGTG TGCCTATGAT GATCTCTTAT AAGAAAGGGT TGCAGAAAAC CGGAGACAAT
CCCACTTTAC TCTATGCCTA TGGTGGATTT GCTATCTCAT TAACGCCTAG ATTTAGCCCT
GCAAATATTG CGTGGATGGA CCTTGGTGGT GTGTATGCGG TGCCGAACTT AAGAGGTGGC
GCCGAATATG GAGAGAGCTG GCATCAAGCC GGAATGCTGG ATAAAAAACA GAATGTGTTT
GATGATTACT ATGCAGCAGC TGAGTATCTG GTCGAGCAAA ATTACACCAA CAAGAGTAAG
TTAGGTGCAT ATGGCCGAAG TAACGGTGGC TTGTTGATGG GAGCAACACT AACGCAGCGT
CCGGAACTGT TTGCGGCAGT CCTTCCGGCA GTCGGCGTAC TTGATATGTT GCGTTTCCAT
AAGTTCACCA TAGGTTGGGC TTGGACCAGC GAATATGGTA GTGCAGATGT GGCCGAGCAA
TTTCCTGCAC TGCTGGCTTA CTCTCCTTAT CATAATGTTA CCGAGAGAGC ATACCCTGCG
ACTATGGTCA TGACTGCGGA CCATGACGAC AGGGTTGTAC CTCTGCACAG CTTTAAGTTT
GGCGCTATGC TGCAAGCCAA GCAAAAAGGC AATGCACCCA TCATCATGCG CATAGAGTCG
AAAGCCGGAC ACGGAAAGGG CAAACCAACA GCCATGAAGA TTGATGAATT TGCCGATATT
TATAGTTTTC TTTTCGATAG CTTTGGTCTG AAAATACCGG CAAAAATTAA CCAATAG
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| Protein sequence | MMVFKSILKK QHILMAGVGI ALMGCQATTT EKQVSSPQIP SPASTIETIH GVQVADPYRH
LEVESEETTN WVKAQQADGH AYLAGIKNKQ AIVDRITELW NYEKVSAPFE HGDNTFYYRN
DGLQAQSVLF VKGADGKEKV LLDPNTLSSD GTVALSGVSV SGDGNTLAYG VSNSGSDWQQ
WQFVDIASGT KLNDELKWIK FSGAEWSKDN GGVYYARYDA PAGGNLLADV NFNQKVYFHK
IGTDQSQDKL VYERPQNKDW GFGIEVSEAG DYLLLSISQG TDSRNRFFYK SLEKDADVVE
LIIDLEAEYS FLGNDKSIFY FKTDLDAPNG KVIAIDVNKS DKSNWHTIIP ESTDPISSIS
IINDHLVVSY LHDVLGKLSI FSLSGDKRQD VTLPGKGKVA GPYGKRSKDY FYYVFNSYAQ
AKTTYRFDFK TGSSTLFTEP KVSFNPDDYV SEQVFYNSKD GTRVPMMISY KKGLQKTGDN
PTLLYAYGGF AISLTPRFSP ANIAWMDLGG VYAVPNLRGG AEYGESWHQA GMLDKKQNVF
DDYYAAAEYL VEQNYTNKSK LGAYGRSNGG LLMGATLTQR PELFAAVLPA VGVLDMLRFH
KFTIGWAWTS EYGSADVAEQ FPALLAYSPY HNVTERAYPA TMVMTADHDD RVVPLHSFKF
GAMLQAKQKG NAPIIMRIES KAGHGKGKPT AMKIDEFADI YSFLFDSFGL KIPAKINQ
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