| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1842 |
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| Symbol | |
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| ID | 5612028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2218586 |
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| End bp | 2219959 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932718 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473581 |
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| Protein GI | 157374981 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.184605 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT CACTTATCGC ATTATCACTC GCGCTTACTA CTGCCTTTGG AGCTAACGCA
ACGGTCACTT ATCATCAGCC GTACGCTCAG ATGGAAACTA ATCTTAATGC CTATGGTGCC
GGCGTCGAGA ATTGGGAAGA GGCAAGGCTC ACTCAATTTA CCATGGCCGA CTCTCACCTT
TATCATCACC ACGCTGTGAT CCCGGCACCT ATCGATAAGA TGCCGATAAA AGTTGTTGGC
GGCTTAGATG TGTCATCTAT CTATATCGAT GATGTGGTCC CTGGAAAGAA GATCAGCCTC
TATGACGTGA TGCGTGACAG AGCCTCTATT CAAAACTATG TCGTAATGAA CAAGAGAGGC
GAGATCCTCG CCGAAGATTA CTGGAACGGT ACCGATAAAG AGACCAAGAA TCACCTGATG
TCGGCACATA AATCATTTAC CTCTATGGCG CTGTTTATTG CTCAGGAACA AGGCCTTCTA
AAACTCACCG ACCCGGTCGG AAAATATATT CCCGAATTCA AAGGCACGAA ATGGGAAAAC
ATCCCACTGC AAAACTTTGC CGACATGAAT GCGGGTATCA TCGACCTTCC TGCCAACCGT
GAAGGTTACC ATTGGGGAGA TTTCGGCGCC GGAACATCCG GTTCCTGGGA CAGCTCTATG
CCCTCTGTCG TTGGCTACAA CGGCCTGGTG ATTAATAAGG AGGGAAAGCT GGTTCCTAAG
CCTGATGCCT TAGGCAACTT GGAGACCTTC AGCGATTATC TCAAGGCCTT TGCGGCACAA
ATAGAGCCTA AGTTTGAGCC CGGTTTCGCA TACGAATATA AAGATCTCAA TACTGAGGTG
CTGGGTACAG CCATAGTGCG CAGCTCTGGC CTGACATTAG CCGAGTTCTT CGACAGATAC
CTCTGGTCGA AAGGCGGTTT TAACTCCGAA GCGACCATGT ACGTCAATCA GGTACACGAG
AGCGCGGCTT CAGGCTCAAT GAATGCAACC GTACGTGATT TTGCAATCGG CGCCTGGTTG
ATGGTCAACG GCGGCAAGAA CTTTAAAGGC GAACAGGTAA TACCCAAGGC GTACATAGAG
CAGATCATTA ACGGCGATAA AATCGTAAAA GAAGCGTGGG ATAAGGTCTC CTATGAGCAT
GGTATCTTCC CGACTGCATT TTACAAAAAT CAGTGGAGAA CGGCGACGCA TCCTGTAAGT
GGGCGCACAC TCTCGACCAT GATTGGTGTT AACGGCCAGT ACTCGGCGTT CGACCACAAA
ACCGGAAATA TCATCGCGAT CACAGGCGCA TACCGTCAGC CATCGGGACT ACAGATGGTA
TCGCTATATA TGTTGGATAC CATCTTCAAC ATCTTCGACC ATCTGGATAA GTGA
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| Protein sequence | MKKSLIALSL ALTTAFGANA TVTYHQPYAQ METNLNAYGA GVENWEEARL TQFTMADSHL
YHHHAVIPAP IDKMPIKVVG GLDVSSIYID DVVPGKKISL YDVMRDRASI QNYVVMNKRG
EILAEDYWNG TDKETKNHLM SAHKSFTSMA LFIAQEQGLL KLTDPVGKYI PEFKGTKWEN
IPLQNFADMN AGIIDLPANR EGYHWGDFGA GTSGSWDSSM PSVVGYNGLV INKEGKLVPK
PDALGNLETF SDYLKAFAAQ IEPKFEPGFA YEYKDLNTEV LGTAIVRSSG LTLAEFFDRY
LWSKGGFNSE ATMYVNQVHE SAASGSMNAT VRDFAIGAWL MVNGGKNFKG EQVIPKAYIE
QIINGDKIVK EAWDKVSYEH GIFPTAFYKN QWRTATHPVS GRTLSTMIGV NGQYSAFDHK
TGNIIAITGA YRQPSGLQMV SLYMLDTIFN IFDHLDK
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