| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1835 |
|---|
| Symbol | |
|---|
| ID | 5612274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2209616 |
|---|
| End bp | 2210356 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640932711 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473574 |
|---|
| Protein GI | 157374974 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGCT TAGTTAATTT TGGAGCTAGT AGCTTGAATA AGAGCGTTAT TACAAACCTG
ATCGCAGCCG CTTTGGTTAT GGCTGGGTAT TTTTTTGCAT CCCCGATTAT CATCAGTATC
GGATTATTTG CACTCTCCGG AGCCGTCACA AACTGGCTTG CGATTCATAT GTTGTTTGAG
AAGGTACCGG GGCTTTATGG CTCAGGTGTC GTTCCATCTC GTTTCGAAGA GTTCAAAGCC
GGGATCTCTC ACTTGATGAT GAAACAGTTT TTTACCGACG AAAATATAGA CCGCTTTTTG
TCGGAGCAAG GTGGCGGTGA ATCTCATATC AATCTGCAAC CTGTGATTGA ACAGGTCGAT
TTGACGCCGG CATTCGATGC CTTAGTCACA ACCGTTGAGC AGTCATCATT GGGTGGCATG
CTGGCCATGT TTGGAGGAAG TGAAGCCATT ACTCCCTTGA AGGAGCCATT TATCGAGAAG
ATGAAAAGCT CTTTGGTTGA GCTATCCCAA AGTGAAGAGT TTTATGCCCT GCTTAAGAGT
GAGTTAGAGC AGCCCGACGT GCTCAATGAT ATGCGCACAA AAATCAATGA AATTGTCACT
CAGCGACTCA ACGAATTGAC ACCGCAATTA GTCAAAGAGA TCATTCAAGA GATGATAAAA
GAACACCTCG GTTGGTTGGT TGTTTGGGGT GGCGTTTTTG GTGGGGTCAT TGGCTTCATA
GCGGCAATGC TAAAGATCTG A
|
|---|
| Protein sequence | MASLVNFGAS SLNKSVITNL IAAALVMAGY FFASPIIISI GLFALSGAVT NWLAIHMLFE
KVPGLYGSGV VPSRFEEFKA GISHLMMKQF FTDENIDRFL SEQGGGESHI NLQPVIEQVD
LTPAFDALVT TVEQSSLGGM LAMFGGSEAI TPLKEPFIEK MKSSLVELSQ SEEFYALLKS
ELEQPDVLND MRTKINEIVT QRLNELTPQL VKEIIQEMIK EHLGWLVVWG GVFGGVIGFI
AAMLKI
|
|---|
| |