| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1797 |
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| Symbol | |
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| ID | 5613226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2164932 |
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| End bp | 2166524 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932672 |
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| Product | integral membrane sensor signal transduction histidine kinase |
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| Protein accession | YP_001473536 |
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| Protein GI | 157374936 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATAA AGCGTTACGT TTTCTTACTT TTTGGAGCTT TGATTCTCTT ACTGGCGGGA
AGTCAGTTAT TCATCTCTCA GTATTTCAAG TCTGAGCTTC AAACTGAGCT CAGTCACAGC
TCTAAAACCT TGTCTCAGAA TTTAGTGAAG GTATTGATTG ATAATGTGGG CGATGAAAAT
GAATTTTTTG TGGAGTATCC GTCCGAGTTT GATGTTGAAC AGTTAGCCGA GATTGAGGAG
GCGGCGGTTT CATTTGCCGA AGATATTCGT GAGTTAGAGG CTGAAATTAA TGAACTGTCA
ATCGATATGG AGCAGGAGCT TACCAGCCCC AACCCTCCTC CAAAGGTCAG AGAGGTGTAT
CGGCGGGGAA TATCGGAAAA GAAGGCGGAG CTAAAAGAGC ATCTTAAAGC GATGGCTGAG
CATGGTCGAG AGATGGAGAG GGCTGAACGT CAAAATAAGA TTGAGATCCG TAAAGAGGCG
GCCAGAGAAT ATCGGGAACG GTTGCATGAA GCGGTCAGAG ATGTCGAAAT TCAGACAGAT
AATTGGTTAG ATAGTGGCAG TATCGCTATC GTCGAAGGAG GTAAAGATGT CACGCTTACT
CTGACAAATG ACTTTAACCT CTCTAACGAG AAGACAAATA CCGAACTCGA ACGTTTCAAC
GATTCTATGT TGCTGCTTAT CCTGGTGACA TCTTTAGTGG CCTTGATGCT CGCTTACCTT
CTGAGTCATT ACGTCAGTGC TCCACTTTCA AAACTTGCCG TGGGACACCA AAAACTCGGG
GAGGGGGAGC TTGGGTATCA GCTTAAAGAG GAGGGAGTGA AAGAGCTGAA ACAGATTTTA
GCCGGATTCA ATGCCATGAG CCGAAAGTTG TCATTGCTCA GTGAAAAAGA GCACCTTATG
AGTCAACAGC AGCAGTTGGC TGAACTGGGT GAGGTGACTC GTGGCATTGC TCATAGCCTG
CGAAATCCGC TACACACGGT TGGTTTACTG TCTGATGGAG TGGTCTTAGC CGACAGTGCC
GAAGAGCGAT CACAGCTAAT ACTTAAGATC CAACAAAAGA TATCCATGAT GGATAAGAGT
ATCCAGTCGT TATTGACCTT GTCGAGTAAT GAAGTGAACA GAAACGGTTC GGTGCCTTTG
ACCGCTATCA TTCAGGATAT CTTGCTGGAA CTGTCCATCA ACGGCTCCAA ACCTGCGATC
AGTTTTGACT GTGATGATGC CGGTATCAGT GTGCTTGGTG CAGAATCCGA GTTACGCAGT
ATCTTGCACG CCGTGATCAT CAACGCCGTG GAGGCGACGC CTGACGAAGG CGATGTCAGT
ATCGGATTAA AAGTCGACGA GGAGGCTTAT CACGTAATAG TCACCGATAC CGGTAGTGGG
ATCCTCCCAG AGGTTCGTGA ACGCTTGTCT CAACCCCATG TCACCACGAA AGCGGAAGGC
ACCGGGATGG GAATATACAT TGCAGAGCGT CTGCTTAAGG GCCATTACGG TGGTGACTTA
GTGTTTGATG ATAATCCCGA TGGGGGCACG ATAGTGACCA TAAGTTTCAA AAGACCGAGT
GCTAATTCCA CTGTTGATGA GACATTAAAA TGA
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| Protein sequence | MSIKRYVFLL FGALILLLAG SQLFISQYFK SELQTELSHS SKTLSQNLVK VLIDNVGDEN
EFFVEYPSEF DVEQLAEIEE AAVSFAEDIR ELEAEINELS IDMEQELTSP NPPPKVREVY
RRGISEKKAE LKEHLKAMAE HGREMERAER QNKIEIRKEA AREYRERLHE AVRDVEIQTD
NWLDSGSIAI VEGGKDVTLT LTNDFNLSNE KTNTELERFN DSMLLLILVT SLVALMLAYL
LSHYVSAPLS KLAVGHQKLG EGELGYQLKE EGVKELKQIL AGFNAMSRKL SLLSEKEHLM
SQQQQLAELG EVTRGIAHSL RNPLHTVGLL SDGVVLADSA EERSQLILKI QQKISMMDKS
IQSLLTLSSN EVNRNGSVPL TAIIQDILLE LSINGSKPAI SFDCDDAGIS VLGAESELRS
ILHAVIINAV EATPDEGDVS IGLKVDEEAY HVIVTDTGSG ILPEVRERLS QPHVTTKAEG
TGMGIYIAER LLKGHYGGDL VFDDNPDGGT IVTISFKRPS ANSTVDETLK
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