Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1772 |
Symbol | |
ID | 5612230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2130572 |
End bp | 2131054 |
Gene Length | 483 bp |
Protein Length | 160 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640932642 |
Product | MarR family transcriptional regulator |
Protein accession | YP_001473511 |
Protein GI | 157374911 |
COG category | [K] Transcription |
COG ID | [COG1846] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAAGT ACGACCAACT ATTAATTTCA TTGCGCCGTG TGATCCGAGC TATCAGCATA CATTCCAGGC AGTTAAATAA AGAGTCTGGA TTAACCGGTC CGCAGTTAAT GGTAATGCGC AAAATTGGTG AACTTGACGC ACCGCTTGCA AAACAGGTTG CTAAAGAGAT CACTTTAAGC CCGGCAACCG TTACTACGAT TCTAGATAGA CTCGAAAGCC GTCATTTAGT CATCAGAACA CGCAGTGAAA CTGATAAACG TAAAGTGCAT TTATCGTTAA GTGAAGCTGG CCAGACGTTA TTAGTCGACT CGCCAAGACC ACTTCAAGAG CATTTTATTA AACGCTACCA AAACCTTGAA GAGTGGGAGC AAAGCCAGTT GCTTTCAGCC GTAGAACGTA TTGCATCTAT GATGGATGCC GACGAGCTCG ATGCTGCACC AGTATTATTG GTAGGACAAA TTCAAGCCGA TGAGACTTTG TAA
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Protein sequence | MEKYDQLLIS LRRVIRAISI HSRQLNKESG LTGPQLMVMR KIGELDAPLA KQVAKEITLS PATVTTILDR LESRHLVIRT RSETDKRKVH LSLSEAGQTL LVDSPRPLQE HFIKRYQNLE EWEQSQLLSA VERIASMMDA DELDAAPVLL VGQIQADETL
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