| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1724 |
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| Symbol | |
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| ID | 5609637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2070700 |
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| End bp | 2071614 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932594 |
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| Product | transcriptional regulator |
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| Protein accession | YP_001473463 |
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| Protein GI | 157374863 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000109192 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATGAAA ATAATTTAGC TAAGGTCGAT CTTAATCTAC TGAAATCTTT ACGCGCGCTT
ATAGAAGAGC GTCATGTCGG ACGAGCAGCA CAAAAAATGA ACGTCAGCCA GTCTGCGATG
AGTCATACCC TTGCAAGATT GAGAGGGGTA TTTGACGATT CACTTTTTAT CAGAAATGCC
AAAGGGTTAG AGCCTACAGC ACGGGCTATC GAACTCTCAG ATAAGCTAAG GTTCATTCTC
AGAGAGATAG ATAGTTTACT TGCCCCCAAA ACATTAGAGC TTTCACACAT TCACGCCCAT
TTCCGTATTC AGACCCACGA CTTTATTCTT GCATCTTATC TTTCGAAGGC ATTTAAAAGA
ATCAACCACG AAGCGCCGAA TATTCTGATA GATATAAAAA TATTAGATGA AACGGCCTAC
GATAAGTTAG ATGATGGAGA GCTGGAGATG ATTATCGGTG CAGGGTTACA GGCTAAACCC
AGATTTATGC AAAAACGTCT TACGGATGAG AATTTAGTTT GTTTACTCGA TAAGGGTAAT
CCGGTATTAA AAAACTGGAC ACCTGAAACC ATTTTTCGAT ACCCCCACAT TAAGTCAAGC
CTGCTCGATG ATCGGGACGA TCCGGTTAGC AAATACGGAA AAGCGATGGG CTTACCCAAG
CGTAAGATAG GCTTCTTAGC CGAGACCCTC AATTTTCAGC TGCCACTACT GTCCGACTCA
GATTTAATCG CATTCTTACC CGATTCTATC GCAAAGAAAG GGAGCCAAGT CTATGGTTTA
GTGGTAAAAG AGTGTCCATT TCCTCTACCA CCTCTCACCA TTCGCGCAAT GTGGCATGAA
AGGCATCAAA ACGATGTCGT TCATCAGTGG ATCCGTGAGA AAATCGAAGA TGTGTTCACC
GATGCCACTT CATGA
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| Protein sequence | MNENNLAKVD LNLLKSLRAL IEERHVGRAA QKMNVSQSAM SHTLARLRGV FDDSLFIRNA
KGLEPTARAI ELSDKLRFIL REIDSLLAPK TLELSHIHAH FRIQTHDFIL ASYLSKAFKR
INHEAPNILI DIKILDETAY DKLDDGELEM IIGAGLQAKP RFMQKRLTDE NLVCLLDKGN
PVLKNWTPET IFRYPHIKSS LLDDRDDPVS KYGKAMGLPK RKIGFLAETL NFQLPLLSDS
DLIAFLPDSI AKKGSQVYGL VVKECPFPLP PLTIRAMWHE RHQNDVVHQW IREKIEDVFT
DATS
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