| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1715 |
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| Symbol | |
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| ID | 5611591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2056843 |
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| End bp | 2058384 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932585 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473454 |
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| Protein GI | 157374854 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1288] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000685021 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACACAT CTGCTTCAAG ATCTCCTCAC GATAACTCTC TAACCAACGC AAGTCGTTGG
CAGATGCCGG ATACACTGGT CATTATCTTT TTTGTGGCAC TGGCTGCTGC ACTGCTCACC
TATATCGTAC CGACAGGATC GTTTCAAACC CAGGATGTCA GCTATATCGC AGATGGCGTA
GAGAAAAGCC GTAGTGTTAT CGACCCAAGC TCATTCTCAT ATGCGTTAAA TGAAGCGGGC
GAGCCTAAGC TGGCACCGGT TGCCTTGTTT GAAGGCGGAG GAGGAACGGG GTTCTTTAAC
TTTGCCTTCG AGGGGTTAGT GTCCGGGTCG AAGTGGGGCA GCGCCATCGG CGTTATCATG
TTTATGTTGG TGATAGGAGG CTCCTTCGGC GTTGTGATGG CAACAGGCAC CATAGATAAC
GGTATCTTGA AGCTTATCGA TAAGACCCGC GGCAATGAGA TGCTGTTTAT TCCGGTGATA
TTTATTCTCT TCTCTCTCGG TGGCGCCGTT TTTGGTATGG GAGAGGAGGC TATCGCATTT
GCTATCATCA TCTGTCCTTT GATGATACGG CTCGGGTACG ATGGTATCAC CACGGTGATG
GTCACCTATG TCGCCACTCA GGTAGGGTTT GCAAGCTCCT GGATGAACCC TTTCAGTGTC
GCCATCGCTC AGGGGATCGC CGGTGTGCCG GTACTTTCTG GCTCAGGAAT GAGAGTCATA
ATGTGGGCTG GATTTACCCT GATGGGGCTG ATTTTCACCA TGCGTTATGC CAACAGGATC
AGACTTACTC CCGAACGTTC CTATAGTTAT CACAGCGATG CCTTTTTTCG GGAAAACCAG
AGTAAAGCCA GTTTAGATAG CCGCTTTAAC TTGGGGGACT TTTTAGTACT ATTCACCATA
GTCGCTACCG TTGCTTGGGT GATCTGGGGC GTCGTAGCTC AAGCCTGGTT TATTCCTGAA
ATTGCCAGTC AGTTTTTTAC CATGGGTATT GTGATCGGCG TAATAGGTGT CTTGTTTAAA
CTCAATGGTT TGACGGTTAA TCAGGTGGCG GTCAGCTTTA AACAGGGCGC TGCGACTATG
CTTGAGCCGG CTGTTCTGGT CGGCTGTGCG TCGGGAATAT TGATCCTGCT CGGAGGCGGC
GGCCCGAGTG AAAACAGTGT GCTTAATACG ATTTTAAACA GTGCCGGTAA TGTTATCGGT
TATCTGCCAG ATGCGCTGTC GGCCTGGTTT ATGTTGCTGT TTCAGGCGGT GTTTAACTTC
TTCGTTACTT CGGGCTCGGG CCAGGCGGCC TTGACCATGC CCTTGATGGC GCCTCTTGCC
GATATCGTCG GCGTGACAAG ACAGGTCGCC GTGTTGGCAT TTCAACTGGG CGATGGCTTT
ACTAATGTGC TCGTGCCGAC ATCGGCGTCT CTTATGGCCA CCTTAGGTGT ATGCCGGGTC
GATTGGGGTG ATTGGCTTAA GTTTATCTGG CGCTTCATGT TAGCACTGTT TGTCGTTTCC
AGTGTGGTCG TTGTGGGCGC ACACTATCTC GGTTTTAGTT AA
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| Protein sequence | MDTSASRSPH DNSLTNASRW QMPDTLVIIF FVALAAALLT YIVPTGSFQT QDVSYIADGV
EKSRSVIDPS SFSYALNEAG EPKLAPVALF EGGGGTGFFN FAFEGLVSGS KWGSAIGVIM
FMLVIGGSFG VVMATGTIDN GILKLIDKTR GNEMLFIPVI FILFSLGGAV FGMGEEAIAF
AIIICPLMIR LGYDGITTVM VTYVATQVGF ASSWMNPFSV AIAQGIAGVP VLSGSGMRVI
MWAGFTLMGL IFTMRYANRI RLTPERSYSY HSDAFFRENQ SKASLDSRFN LGDFLVLFTI
VATVAWVIWG VVAQAWFIPE IASQFFTMGI VIGVIGVLFK LNGLTVNQVA VSFKQGAATM
LEPAVLVGCA SGILILLGGG GPSENSVLNT ILNSAGNVIG YLPDALSAWF MLLFQAVFNF
FVTSGSGQAA LTMPLMAPLA DIVGVTRQVA VLAFQLGDGF TNVLVPTSAS LMATLGVCRV
DWGDWLKFIW RFMLALFVVS SVVVVGAHYL GFS
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