| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1684 |
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| Symbol | trpD |
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| ID | 5609927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2018449 |
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| End bp | 2019507 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640932554 |
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| Product | anthranilate phosphoribosyltransferase |
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| Protein accession | YP_001473423 |
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| Protein GI | 157374823 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0547] Anthranilate phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR01245] anthranilate phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACA GCACAGATCT ACAACCACTT ATCGACAAAT TGTATCGAGG TGAGAGTGTC
TCACGCAGCA AAGCCAAGCA ACTGTTCAGC TGCATCATTA ACGGTGAGAT GAGCGAAGCG
GCAATGGCAG GCATGTTAGT CGCCATGAAG ATGCGCGGCG AAACCATAGA TGAGATATCC
GGCGCTGCAG ATGCGCTTAT ATCGGCGGCA AAGGCATTCC CAACTCCCAG TGATGCGACT
CGAAAACAGG GAATCGTCGA TATTGTCGGT ACCGGCGGCG ATGGCCACAA CACCATCAAT
ATCTCCACAA CGGCGGCCTT CGTTGCTGCA GCGTCCGGGG CTAAGGTGGC TAAGCATGGC
AATCGCAGTG TATCGAGCAA ATCAGGCTCA TCGGATCTGC TGGCGCAATT TGGTATCGAC
CTTACCATGG CGCCGGAGAC CGCCCGGGAT TGCTTAGATG AATTGGGGCT CTGTTTCCTG
TTTGCTCCAC ACTATCACGG CGGGGTTCGC CACGCAGTTC CCGTCAGACA GGCGCTCAAG
ACCCGCACCC TGTTCAATGT CCTGGGGCCA CTCATCAACC CCTCTCACCC GGACTACATC
CTGCTCGGCG TTTACAGCGA AGAGTTGGTT CAACCGATAG CTGAAGTACT CAAAGCACTG
GGGATGAAGC GCGCGATGGT CGTTCATGGT AGCGGACTGG ACGAAGTCGC TGTCCATGGC
AATACTTCAG TCTGTGAGCT CACAGACGGC GAGCTCAAAC AATACACCCT AACCCCTGAG
GTGCTGGGCG TACCCAGGGC AAACCTGAAA GAGTTAGAGG GCGGCTCGCC CGAAGAGAAT
GCCGAGTTCA CCCGCGCTAT CTTACAGGGC CAAGGCCGGA CGGCGCATAC CAACGCGGTC
GCGGTTAATG CAGGTTGCGC CCTGTACATT TCAGGCGTGT GTGATAGCGT CGAGTCGGGT
ACAGCACTGG CACTAGAGAC GTTAGCCAGC ACCAAGGCCT ATACACTTCT TGAGCGGCTT
GCCAGTGCAA GCGCTAACCA AGCAAAAGTC GGAGCATAA
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| Protein sequence | MSDSTDLQPL IDKLYRGESV SRSKAKQLFS CIINGEMSEA AMAGMLVAMK MRGETIDEIS
GAADALISAA KAFPTPSDAT RKQGIVDIVG TGGDGHNTIN ISTTAAFVAA ASGAKVAKHG
NRSVSSKSGS SDLLAQFGID LTMAPETARD CLDELGLCFL FAPHYHGGVR HAVPVRQALK
TRTLFNVLGP LINPSHPDYI LLGVYSEELV QPIAEVLKAL GMKRAMVVHG SGLDEVAVHG
NTSVCELTDG ELKQYTLTPE VLGVPRANLK ELEGGSPEEN AEFTRAILQG QGRTAHTNAV
AVNAGCALYI SGVCDSVESG TALALETLAS TKAYTLLERL ASASANQAKV GA
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