| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1679 |
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| Symbol | |
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| ID | 5611083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2012657 |
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| End bp | 2013247 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932549 |
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| Product | putative dipeptide ABC transporter |
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| Protein accession | YP_001473418 |
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| Protein GI | 157374818 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1124] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCAGT TGCGTAATGC CGGTTTAGAT TACGGTAACA CTCATATTAG TTTTCCCGAC
CTTACTCTTG AGCCGGGGCA AAGGTTGGGA TTATTTGGTC CCAGTGGTCT GGGAAAATCT
TCGCTTGCTA AGGTGCTTGC AGGTATTGAG CCTTTGAGCC AGGGCGAATT AACCCTGCCT
GGTTTTGCTC AAGGGAGCGC TAATCCGGTG CAGTGGGTTA TTCAGCAGAG TGAGTTCGCT
TTCAATCCTC GTTTATCGAT TAGGCAATCC TTGCGAGAGA GTTGGAGAAA TGATGATTTT
ATGGGAGTGC TCGACCGTTA TGGGGTCGAT CCCCTGTGGC TGAACAGACG CCCTTTACAG
GTATCCGGTG GACAACTACA ACGGGTTAAT CTGGTCAGAG CTATAATTCC TTCGACCGAG
TATTTGATCT GCGATGAGAT AACGGCGCAT CTGGACATGA TCACTCAACA ACAGATCTGG
CTGGCTTTGG GTGAGGAGGC CGGTCAACGC AGACTGGGCT TGCTGGTTAT TTCTCACGAT
GAAGAGCTAC TTAATCTGGT CTGTGATGAC GTGCTCAATT GGACTGGATA A
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| Protein sequence | MLQLRNAGLD YGNTHISFPD LTLEPGQRLG LFGPSGLGKS SLAKVLAGIE PLSQGELTLP
GFAQGSANPV QWVIQQSEFA FNPRLSIRQS LRESWRNDDF MGVLDRYGVD PLWLNRRPLQ
VSGGQLQRVN LVRAIIPSTE YLICDEITAH LDMITQQQIW LALGEEAGQR RLGLLVISHD
EELLNLVCDD VLNWTG
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