| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1678 |
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| Symbol | |
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| ID | 5611082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2011945 |
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| End bp | 2012673 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640932548 |
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| Product | oligopeptide transport ATP-binding protein OppD |
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| Protein accession | YP_001473417 |
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| Protein GI | 157374817 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGTCCGG AGGTGAGTTT GCTTAAGGTT AATGAGTTAT CGATTCAATC AGAAGAGGTT
AATCTGCTGG CACCACTGAG TTTCGAGTTA ACAGCGGGTC AATTAACCGG AGTTATTGGC
GCCAGTGGCA GTGGTAAAAG TCTGTTGGCG CAAGCCTTGC TCGGGAGTGT CCCTCGCGGT
TTCACACTTT CGGGAGAGGT CAGTTTACCC CAAGACCAAC GGGTCGCCCT GTCGGCGCAG
TCGGCAAGTG TACTGGATCC TTTGCGTACG GTTATTTCAC AGTTAAAGAG GCGTGTATCC
CCGGGGGCGG GTAAGAGAAC TTCTCAGCTA CAGAGGGTGA ATATTAGCCG GAAGATCGCC
GCCTGTTACC CCCATCAACT CTCCGGTGGG ATGGCTAAAA AAGCGCTATT GGCCCAAGCG
ACCTGGCAGC AGACTGATTT TGTTGTTGCC GATGAGCCAT GTTGTGGGTT AGATACTTCC
AGCGCCACTG AGCTATATCG GTATCTGGCA AAGCTTGCAG CACAAGAGCG CCGGGGGGTA
CTGGTTATCA GCCACAACCT TAAGCACTTG TTGACGGTGG CCGATGATAT TTTAGTGTTA
AAAGAGGGGC AACTGGTCGA GAAAACGACC CCGGAGAAGA TACTCAAGGG ACTGTGTGCA
CCTTATACTT ATGCGCTTTG GCAGGCCATA CCCGGTAACT GGGGGAGGAC AGATGCTGCA
GTTGCGTAA
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| Protein sequence | MCPEVSLLKV NELSIQSEEV NLLAPLSFEL TAGQLTGVIG ASGSGKSLLA QALLGSVPRG
FTLSGEVSLP QDQRVALSAQ SASVLDPLRT VISQLKRRVS PGAGKRTSQL QRVNISRKIA
ACYPHQLSGG MAKKALLAQA TWQQTDFVVA DEPCCGLDTS SATELYRYLA KLAAQERRGV
LVISHNLKHL LTVADDILVL KEGQLVEKTT PEKILKGLCA PYTYALWQAI PGNWGRTDAA
VA
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