| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1675 |
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| Symbol | |
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| ID | 5611817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2008622 |
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| End bp | 2010160 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932545 |
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| Product | oligopeptide-binding protein OppA |
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| Protein accession | YP_001473414 |
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| Protein GI | 157374814 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.642155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGAACAT TATTTGTTAT TATCGGTCTG TTTTGTATTT CAGTTTTTGT TAATTCAGCA
AATGCTCAGC CTAATACATT AACCATAGCT TTAGGTGCCG AACCAGATAG TGGCTTCGAT
CCTGTTTATG GTTGGGGTAA GTATAATAAC CCTCTATTTC AGTCATCGTT AATAAAACGA
GATGATAAAT TAAAATTAAC TCCGGACTTG GCTTTATCCT GGGTTTTATC TAAAGACAAA
CTCACTTGGG ATTTAAATCT AAGAGATGGA GTGTTATTTA GTGATGGAAC TCAGTTAACG
GCTGAAGATA TTAAGTTTAC ATTCGACACT GCTAAAGCTG CTGCAAGTGT TCATGACTTA
ACTAACTTGT CAAAAGTAAT TATTACCTCC AATAATTCAT TGTCATTTAA ATTAAAAAAG
CCAGATATAA ACTTTATCGA CAACTTTATT AACCTCGCGA TCGTTCCCGC ACACTCTTAT
AATTCAGGTT ATGGTCAAAT GCCTACCGGC AGTGGGCCAT TTAAGCTGGT ACGTTGGGAT
AAGGGGCAAC AGTTAATTGT TAAAGTTAAT CCATATTACT ACGGCCAGAA ACCATTTTTT
GAAAAACTGA TCATAGTGTT CAGCGATGAG GAGAGCCGCT ATTCGCGCTT AGTTACCGGC
CAACTGGACT TGGCGGCCAT AGCGCCGCGC TACGCACAGG CTTTACCTGC CGGTTTTAAA
CTCTGGAGTA TCGAGTCGGT TGACAATCGT GGGATCTCCT GGCCCATGCC GGGTGTACAA
AGTGACGATA TCGGCAATGA TGTCACATCT CAATTAGTGA TACGTCAGGC GATAGATAGG
GTGATAGATC GTGATGTACT CGTGAACCAG TTACTCGATG GCCACGCCAC GGCGGCATAT
TCTATTGCCG ACGGCTTGCC CTGGGGCCCG GTTGAGACTC CCCTACAGGT GTCTTCCGAC
AAGCAGTTGT CTGAAGCGTT AGCGCTGCTG GATAAATCGG GTTGGAAGCT TGTCGATGGC
ACACGTCAAA AACAGGGTCT TAGGGCGAGC ATGACACTCT ACTACCTTGC CGGCGACAGT
ATCCGTGAGC AGCTGGCCTT AACTGTTGCG CAGATGGTGA AGCCTTTAGG TATTGAGATA
CATCCGAGGG GGGAAAGCTG GGAGAATATC TATAAGCATA TGCATAACCA ACCTGTGTTG
TTTGGCTTCG GTAGCCATTC GGCCAGTGAA GTGAGGTTTG TGCATCACAG CCAATATCGG
GGCCGGGACT ATTACAATGC AGGTTATTAC ATTAATGCTG AGTTAGATGC TGTGCTCGAC
AGTGCGCAGC ATGCGGCTTC ATGGGAGGAG TCACTGCCAT ACTGGAGGCA CGCTCAGGCA
TTGATACGTC AGGATCTTCC CTGGACCTGG CTGGTTAATC TTAGGCATCT CTACGCAGCA
AATCGCTGCC TCGATCTCGC CGAGCCGGGA GTCGAACCCC ATGGGCATGG TTGGCCTTTA
GCCAATAACA TCAGCAAGTG GCGCTGGACA TGCCAGTAA
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| Protein sequence | MRTLFVIIGL FCISVFVNSA NAQPNTLTIA LGAEPDSGFD PVYGWGKYNN PLFQSSLIKR
DDKLKLTPDL ALSWVLSKDK LTWDLNLRDG VLFSDGTQLT AEDIKFTFDT AKAAASVHDL
TNLSKVIITS NNSLSFKLKK PDINFIDNFI NLAIVPAHSY NSGYGQMPTG SGPFKLVRWD
KGQQLIVKVN PYYYGQKPFF EKLIIVFSDE ESRYSRLVTG QLDLAAIAPR YAQALPAGFK
LWSIESVDNR GISWPMPGVQ SDDIGNDVTS QLVIRQAIDR VIDRDVLVNQ LLDGHATAAY
SIADGLPWGP VETPLQVSSD KQLSEALALL DKSGWKLVDG TRQKQGLRAS MTLYYLAGDS
IREQLALTVA QMVKPLGIEI HPRGESWENI YKHMHNQPVL FGFGSHSASE VRFVHHSQYR
GRDYYNAGYY INAELDAVLD SAQHAASWEE SLPYWRHAQA LIRQDLPWTW LVNLRHLYAA
NRCLDLAEPG VEPHGHGWPL ANNISKWRWT CQ
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