| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1642 |
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| Symbol | |
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| ID | 5611047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1962152 |
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| End bp | 1962685 |
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| Gene Length | 534 bp |
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| Protein Length | 177 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932512 |
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| Product | tRNA/rRNA methyltransferase (SpoU) |
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| Protein accession | YP_001473381 |
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| Protein GI | 157374781 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00428557 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAAA GTTATGTCAG TATCGGGTTA GTTAACCCCA AGAGCCCGAC TAATGTGGGT
GGGATCATGC GCGCTGCGGG TTGTTACCGT GTTGATGAAG TATTCTACAC CGGCAAGCGG
TACCCGTTGG CCGCGAGTAA TGGCACGGCG CAATACAATA CCGATACCAA AGGGGCAGGT
CAGCAGATCC CGCTAAGCGG TGTGGAGTCT TTGATAGATG CAGGTCCTGA TGGCGTGAAG
ATTATTTGTG TCGACTTGGT TGAAGGTGCA ATACCACTTC CTGAGTTTGA ACATCCCGCG
AAGGCCATCT ACGTCTTCGG CCCCGAGGAT GGCACCATAA GTCAGCAGGT GATCAACAGA
GCCGATGCCG TTGTTTATGT CCCTACCGTC GGCTGTATGA ATTTGGCCGC ATCGGTCAAT
GTCTTGCTGT ACGACAGGTT ATCTAAGTCG GCTCAAACCA TAGCCAATGA CGATCTGATC
AGAGAAAGCC GTGATACTAA TAATCGAGTC AGAGTAAAAA ATAAGAGTAC ATAG
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| Protein sequence | MKQSYVSIGL VNPKSPTNVG GIMRAAGCYR VDEVFYTGKR YPLAASNGTA QYNTDTKGAG
QQIPLSGVES LIDAGPDGVK IICVDLVEGA IPLPEFEHPA KAIYVFGPED GTISQQVINR
ADAVVYVPTV GCMNLAASVN VLLYDRLSKS AQTIANDDLI RESRDTNNRV RVKNKST
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