| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1608 |
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| Symbol | |
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| ID | 5613339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1918105 |
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| End bp | 1919637 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932478 |
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| Product | XRE family transcriptional regulator |
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| Protein accession | YP_001473347 |
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| Protein GI | 157374747 |
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| COG category | [K] Transcription |
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| COG ID | [COG1396] Predicted transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.118934 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAATA ACCAAAGCTT AATGAGAAAA TCACATTTTC TGGGAACTAA GATAAGAAAC
CTAAGAAAAC GTAATCATTT GACGATGGAG GATCTCTCCG CTCGATGTGT TCGAGTCGAT
GCAGATTCGG CTCCATCGGT CTCCTACCTT TCTATGATTG AGAGAGGAAA GCGGGTACCC
AGCGCAGGCA TGATGGCCGT CATCGCCGCC GTTTTTCAAA AAGAGGTCGA TTGGTTCTTA
GACGATGTCC CCGAAGATCA AGCCATTACG CCCGAGAAAG GCAGGCGAGG CGGAATAAGT
GGCATGGCAT TAGAGCCAAG CTTTCTCTTT TCAAAGGATA TTTTGCAGAT AGCCATACCT
GAGATGTTAT CTCAGACCGG TATTACAGGC CGCCAGTTTG CCCATCTGCT TATCCGTGCT
CATCAGGAGC ACCATCAGAA TCACTTTCCG GATCTCGAAC GTGCAGCCGA AGAGATAGGC
CTTAAGCGTA TGCCACTCGC GGTTGAAGAT CTGATGGATA TCGCAAAAGG TTTGGGGCTC
TCGATAAAGT GGATCAACGA TACTCCTCAC GATGTCGTCG ATGAGATGGG GGTCACCTCC
AGTCAACTTG TCACCTCATT CTTCGAGCCT CCATCGACCA TTTACGTCAA TGAACAACTT
AAGACGACTC CTATCAGGCT CAAATACGAT CTCGCCGTAC ACATAGGTCA TTGCGTACTG
CACAACAAAG ACGGGCTCAA ATCTGTGTTA ACCACAGGCC GAAGCCAGAT CAGTGCAGAT
GTGGATTCGG GGGTCCCCCA ATCTTCGACC GTTAATGCCC AAGATATTCT CCATGCCTGG
CGTGACTTTG AATCAAGTTT TTTTGCCGGC GCCCTACTCT GTCCTAAGGT GCCATTCAGG
CAGTTACTGG ATCGCCACGG ATACGAGATA GACGTTCATA AACAACTGGG CGTATCAGCC
TCGGTAGCCA TGCGCAGAAT GACTGTAGTA TCTCCCTACC CTCACTGGCA CTACTTCGAT
GCCTATGCCC CGGGTAAATT GAAAGCGGTA TATCGCGGTA ACGGTATTCC ACTGCCTTGG
GGGAACATGA GACAGGTGCA GGACCCCTGT CAGCATTGGG CGGTATTTAG GATGATCAAC
GAACCTACGG AGGGGACATC GGCGCAGATT TCGATACTCA ATGTTGAAAA TGAACCCAGG
ATCTACTGCT GTGAGTCGAT AAAAGTCGAA GATCTTGCCG GTAATAATCA TGTACTTTGC
GCAGGTATCG ATCTTAACCC AGCCATCGAA GCACAAGGTG GCGATGCACT TTCGATAGCA
TCGGATCTGA AACAGGCATG TGTCACTCAC GGTGGCTCGG CATCGATACC AAAGGTTATC
AAGAAGGAGC TGATGAGCGT GGCGAAAATT CTCAATATCA ACTGGGTAGA GCGAGGCATT
GAGTCCGAGG CCAGAGTGAT CTGCTCCAGA GGCGCTGTAT GCCCACGAGA TCCCAGCTGT
TACCAATCGG GAAAGAGTCA ATGTGATGGG TAA
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| Protein sequence | MRNNQSLMRK SHFLGTKIRN LRKRNHLTME DLSARCVRVD ADSAPSVSYL SMIERGKRVP
SAGMMAVIAA VFQKEVDWFL DDVPEDQAIT PEKGRRGGIS GMALEPSFLF SKDILQIAIP
EMLSQTGITG RQFAHLLIRA HQEHHQNHFP DLERAAEEIG LKRMPLAVED LMDIAKGLGL
SIKWINDTPH DVVDEMGVTS SQLVTSFFEP PSTIYVNEQL KTTPIRLKYD LAVHIGHCVL
HNKDGLKSVL TTGRSQISAD VDSGVPQSST VNAQDILHAW RDFESSFFAG ALLCPKVPFR
QLLDRHGYEI DVHKQLGVSA SVAMRRMTVV SPYPHWHYFD AYAPGKLKAV YRGNGIPLPW
GNMRQVQDPC QHWAVFRMIN EPTEGTSAQI SILNVENEPR IYCCESIKVE DLAGNNHVLC
AGIDLNPAIE AQGGDALSIA SDLKQACVTH GGSASIPKVI KKELMSVAKI LNINWVERGI
ESEARVICSR GAVCPRDPSC YQSGKSQCDG
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