| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1586 |
|---|
| Symbol | avtA |
|---|
| ID | 5612127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1892094 |
|---|
| End bp | 1893353 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640932456 |
|---|
| Product | valine--pyruvate transaminase |
|---|
| Protein accession | YP_001473325 |
|---|
| Protein GI | 157374725 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3977] Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTTT CTAAGTTTGG TGAAAAGTTT AATCGTTATT CCGGTATCAA CCGTCTGATG
GATGATCTCA ATGAGGGCCT GCGCACGCCG GGAGCCATCA TGTTGGGAGG CGGTAATCCG
GCAACGATTC CGGCGATGCA GGATTACTTT CACCAGGCGA CAAGCGAGAT GCTGGAAAAT
GGCGATCTGG TCGCGGCATT GGGTAATTAT GACGGCCCAC AGGGTAAAAA CACCTTCTTA
AAGGCTTTAG CAGATCTGTT ACATGAGACC TATGGCTGGG ATATCAGCGA GAAAAATATC
AGCCTGACCA ACGGCAGCCA AAGTGCATTC TTCTATCTGT TTAACCTGTT GGCGGGAAAA
CAGCTCGATG GCAGTCACAA GAAGATACTC CTGCCTCTGG CACCCGAGTA TATCGGCTAC
AGTGATGCGG GCTTAGATGA CGATATTTTT GTCTCCTACA GGCCGGAGAT TGAGCAGTTA
GATAACCGCA TGTTTAAATA CCATGTGGAT TTTGAGCAGT TAACAGTGGA TGACTCGGTA
GCAGCCATCT GTGTTTCCCG GCCAACCAAC CCCACGGGGA ATGTGCTGAC CGACGCAGAG
GTAGCCGAGT TAGACAGATT AGCTCAAGCT TATGATATTC CGCTGATTAT CGACAACGCC
TACGGCACCC CATTCCCCAA TATCATCTTC GAAGAGGTCA CCCCCTTCTG GAACAGCAAC
ACCATACTCT GTATGAGCCT GTCCAAACTT GGCCTCCCTG GCGTGCGCTG CGGTATCGTG
ATTGCCAATG AGGAGACCAC TCAGGCACTA ACGAACCTTA ACGGCATCAT CAGCCTGGCC
CCCGGAGGTT TCGGCCCCGC GATTGCCAAG CATATGATTG AGTCGGGTGA TCTATTACGC
TTAAGCGAAA CGGTCATCAA GCCTTTCTAT AAAGAGAGAT CTGAGTTTGC CGTATCCCTG
CTGCAGGAGT CTATCAGCGA TACCAGATTC AAAATCCATA AACCTGAAGG CGCCATGTTC
CTCTGGCTAT GGTTCGATGA GCTGCCAATC ACCACCATGG AGCTGTACGA CAGATTAAAA
GCACGCGGTG TACTGATCGT CCCCGGAGAG TACTTCTTCT TCGGCCAATC GGAAGACTGG
GACCACGCCC ACCAATGCCT GCGGATGAAC TATGTGCAGG ATGAAGCCAA GATGCGCGAT
GGGATAGCGA TTATCGCCGA AGAGGTGAAG AAGGCTTACT TGTCGAATAA CAAGTGTTAA
|
|---|
| Protein sequence | MQFSKFGEKF NRYSGINRLM DDLNEGLRTP GAIMLGGGNP ATIPAMQDYF HQATSEMLEN
GDLVAALGNY DGPQGKNTFL KALADLLHET YGWDISEKNI SLTNGSQSAF FYLFNLLAGK
QLDGSHKKIL LPLAPEYIGY SDAGLDDDIF VSYRPEIEQL DNRMFKYHVD FEQLTVDDSV
AAICVSRPTN PTGNVLTDAE VAELDRLAQA YDIPLIIDNA YGTPFPNIIF EEVTPFWNSN
TILCMSLSKL GLPGVRCGIV IANEETTQAL TNLNGIISLA PGGFGPAIAK HMIESGDLLR
LSETVIKPFY KERSEFAVSL LQESISDTRF KIHKPEGAMF LWLWFDELPI TTMELYDRLK
ARGVLIVPGE YFFFGQSEDW DHAHQCLRMN YVQDEAKMRD GIAIIAEEVK KAYLSNNKC
|
|---|
| |