| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1576 |
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| Symbol | |
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| ID | 5610854 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1881459 |
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| End bp | 1882718 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932446 |
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| Product | tetratricopeptide domain-containing protein |
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| Protein accession | YP_001473315 |
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| Protein GI | 157374715 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0116685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0709057 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTAAAG TTAGTTTTAA ATCGACTAGT ATAGCAGCAG CTTTATTGTT CTCCTTAGGT
GGAAGTTTAG CTCTGGTACC AGCTGTTAAT GCCGCTGAGA AATGTGAAAT CGACACGCGT
AAGTCCAAAG CTGTTGGTCA ATCCGCAGCT AAAAAAGTAC AAAAGTCTTT CAAAGCGTAT
CAAGAGGGTG ACATCGACGC AGCGATAGAA GTTTTACTTG AAGCAGATCC TCGTCATGAT
TTTGATAAAG CGTATATTGC CCGTATGTTG GGTAACTTTT ATGCTGAAAA ATCTCAGATG
GGCACGGCGA TCAAGTATCT TAAAACTGCC GTCGATTTCG ATATTCTGGG TGGAACTGAC
ACCGCTGCGA CTTTACGTCT CTATGCCGAT CTCTTATTGC AAGAGAAGAA GTTCAAAGAA
GCGATTCCGT ACTACTACCG ATGGATGGAG TTCACATGTA AGCATGAAGC TCAGATCTAT
CGTCGTATCG GTATTGCATA CTCTGAACAG AAGAACTGGA ATAAAGTTCT TGAGGTTGCA
GATAAAGGCT TAGCCATCAG TGACAAACCT GACAAAGGTT TGTACCAGAT GAAGCTAACG
GCTTACTTCA ACCAAAAGAA GTATCCAGAA GCGGTTAAAG TGTTAGAGAC CATGGTGCCT
CTCTTCCAGG ACGATAAACG TCTTTGGGTT CAGTTAGCTC AGTTCTATCT GATGACTGAA
AAGTACACCA AGTCGCTGGC CACTTATGAT TTAGCGTATA AGAATGGATT TTTAGAGACT
GCGGGTAACA TTACTCGTCT GACTCAGCTG CTTGCACAAA ATGGTTCGCC ATATCGTGCC
GCGACTATCT ATCAAAAGCA TATGAAATCA GGAGTGATAA AAGAGGAAGA GAAGACTCTT
GCGATTTTAG CCGGTTTCTA TCATACCGCT AAAGAGCTTA AAGAAGCTGC GCTGTACTAT
GGCAAAGCGG CTGAAGCGGG TAATAATGGT AAGTACTACC TGCGTCAGGG GCGTATTCTT
TCCCTCGATG GCAAGTCTAA GGCTGCTATT CCGGTTCTCA AGAAGGCACT CGATGCCGGT
ATTGACCACC CTGGTGAAGC TCAGTTTGAA TTGGCATTGG CCTATCTCAC TAATAAGCAA
TACAAGTCAG CGTATAAGCG CTGCAAGTTA GCTGTTAAAG ATGATAAGAC AGCCCGTTCA
GCGAAGGGAT ATATCTCTTA TATTAAAGAG AAGGCTCGAA TTCACAACGT AACCTTGTAA
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| Protein sequence | MRKVSFKSTS IAAALLFSLG GSLALVPAVN AAEKCEIDTR KSKAVGQSAA KKVQKSFKAY
QEGDIDAAIE VLLEADPRHD FDKAYIARML GNFYAEKSQM GTAIKYLKTA VDFDILGGTD
TAATLRLYAD LLLQEKKFKE AIPYYYRWME FTCKHEAQIY RRIGIAYSEQ KNWNKVLEVA
DKGLAISDKP DKGLYQMKLT AYFNQKKYPE AVKVLETMVP LFQDDKRLWV QLAQFYLMTE
KYTKSLATYD LAYKNGFLET AGNITRLTQL LAQNGSPYRA ATIYQKHMKS GVIKEEEKTL
AILAGFYHTA KELKEAALYY GKAAEAGNNG KYYLRQGRIL SLDGKSKAAI PVLKKALDAG
IDHPGEAQFE LALAYLTNKQ YKSAYKRCKL AVKDDKTARS AKGYISYIKE KARIHNVTL
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