| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1559 |
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| Symbol | |
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| ID | 5612937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1859954 |
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| End bp | 1861132 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932428 |
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| Product | methionine gamma-lyase |
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| Protein accession | YP_001473298 |
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| Protein GI | 157374698 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR01328] methionine gamma-lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.950223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000115216 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGGATA AATGGAAGCC CGCCACGAAA GTGATACATG CAGGACACAT CAAAGACAGC
TCTGGAGCCT TAGTCTCGCC TCTATGTCAG AGTGCCACCT TTGTCTTTGA CAGTGCCGAG
CAGGGGGCAT CGAGATTTGC AGGCGATGAA GCGGGTTATA TTTATACTCG TCTGGGAAAC
CCGACGACAG CCGAACTTGA GCGAAAGATG GCTGTTTTGG AGGGGGCTGA GGCCGCCACG
GCAACCGCGT CGGGCATGGC GGCGGTATCA TCGGCTTTAT TGGCTAATTT GAGCCATGGG
GATCATCTCG TCGCCTCTAA AGCCGTTTAC GGTTGTACTT TCTCCTTGGT GACCAGCCAA
CTGGTAAAGT TTGGCATTCG AGTGACGCTG GTGGATTTTA ATGATCTGAA CGCGGTTGCT
GATGCCATAA CCTCTGACAC TAAAGTCATA TTCTGTGAAA CCCCGGTCAA CCCACACCTC
GATGTATTCG ACCTCGATGG AATTGCAGAG ATCGCGAAGC AACATGGATT GATCAGCATT
GTCGATAATA CCTTTATGAC TCCGCTTCTT CAGCAACCAC TGAGTCACGG TATCGATATC
GTTATTCATA GTGCGACTAA ATATTTGAAC GGCCATGGTG ATGTCATCGC CGGCATTATC
TGTGGTTCTG ATGAGCAGAT TGAAAAGATT AAATATGAGA CCTTGAAAGA CTTAGGTGGA
GTTCTTTCCC CCCATGATGC CTGGCTGATC TTAAGGGGAC TTAAGACATT AGATGTACGA
CTCGAGCGGC ATTGTGATAA TGCAGAGGTG ATCGCGCAAT ATTTACTGAA TCACAATAGG
GTCACCAAGG TTTATTACCC GGGGATCAAG GGACATAGCG GCCACCAATT CATAGGGCAG
CAGATGAAAA GAGCCGGTGG AGTCATTGCC TTCGAGCTCG ATGCCAGTTT GGAACAGAGC
ATCAAATTTA TTAATGGCTT ACACCTTTTT GCTATTGCCG TGAGTCTGGG TGATGCCGAA
TCACTTATCC AACATCCTGC ATCCATGACG CATTCTCCAT ACTCAGATGA AGAGAGGGAG
GCTGCGGGGA TTGGCGCGAG TCTGTTAAGG ATCTCCGTCG GTCTGGAGTC GGTTGAAGAT
CTGATTGTCG ACCTGGAGCA GGCTCTGTCA CGAATTTAA
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| Protein sequence | MQDKWKPATK VIHAGHIKDS SGALVSPLCQ SATFVFDSAE QGASRFAGDE AGYIYTRLGN
PTTAELERKM AVLEGAEAAT ATASGMAAVS SALLANLSHG DHLVASKAVY GCTFSLVTSQ
LVKFGIRVTL VDFNDLNAVA DAITSDTKVI FCETPVNPHL DVFDLDGIAE IAKQHGLISI
VDNTFMTPLL QQPLSHGIDI VIHSATKYLN GHGDVIAGII CGSDEQIEKI KYETLKDLGG
VLSPHDAWLI LRGLKTLDVR LERHCDNAEV IAQYLLNHNR VTKVYYPGIK GHSGHQFIGQ
QMKRAGGVIA FELDASLEQS IKFINGLHLF AIAVSLGDAE SLIQHPASMT HSPYSDEERE
AAGIGASLLR ISVGLESVED LIVDLEQALS RI
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