Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1527 |
Symbol | |
ID | 5613220 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1819448 |
End bp | 1821616 |
Gene Length | 2169 bp |
Protein Length | 722 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640932393 |
Product | decaheme cytochrome c |
Protein accession | YP_001473266 |
Protein GI | 157374666 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACGCA AAATTATGGA TATAAAAAGA AAAAGTTCGA CGCTTAATCT GATTGCGCTG ACTTGCTCTG CCCTGCTGTT TGGTTGTGGA AGCGACGGTA AAGACGGGGA AGATGGAAAA GATGGCGTGG TCGGTGTCAA TATCGATTCC ACGGCGACAC TGTCCGCCAA TATCTCTACA GCATCGGTCA CCGATGGCCT GATCACCATT AATTTTGATC TGACGAATGC CAATGGCGTC GCGGTACTGG GGTTGACCAA AGACCATGAC CTGCGTTTTG GTATTGCTCA GCTCACCCGA GTCAGTGAAA CCATGGGCGA TACCGAAGTA GACAGAGGGT TTAACTGGCA GGCCTATATC AATGCCGAGA AGACCCCCAA CCCGGATTGG ATCCCCGAAG GTGAATCGCA TATCAATCCT TCGAACCAAT ATCAGGCCAA TGTTGAAAAA GCCGCCGATT GTGATGAGTG TTTCCTCGAT AACGGCGATG GCAGTTATGC CTATACTTAT CAGGTTAATA TTGCAGAGGT GACCGAGCCT TTAACCGTTA CTTACAGCGC CGACTCAACC CAAAGAGCGA CCCTCGAACT TGAACTTCCT CAGGTAACGG CCAATGCCTT CCTGGATTGG CAGCCCTCGT CAGAGTCCAG CGAAGGCATT CAAACCCGGG ATGTCGTCTC CATTGAAACC TGCTATACCT GTCATCAAGT CGAGAGCCTT GCACTTCATG GTGGACGAAG AATCGCAATT GAAAACTGCG CATCTTGTCA TACCTCGACC TCCGGCGATC CTGAAAGCGG AAACAGTGTC GAATTTACCT ATATGATCCA TGCGATTCAT AAAGGAAATG AGAGGATGAC CAGCACAGCC GATGGCATGG TTCCTGCCCC CTATAAGATC ATAGGTTATG GCGGCGGAAT ACATGATTAT GGCAAGGTGA TGTTCCCACA AGGCCCCGCC GCCGATTGCA GCTCTTGTCA CGTGGAGGGA GAAGGCGCAC CAGCCGATGC AGATCTGTTT AAGGCCGATC TCAGCAATAC CGCTTGCGTG GGTTGTCACA CCGAAAAACC ATCGCAAAAT CATAGTAGTA CCAACTGTAT AGGTTGTCAC AACTCGACCG ATACTTACCC CGGAACCGGC AGTGCAGAGA AACGTCACTT TGATGTAATG AAGGCCTATA GCGATGCCAG GGCGATGAGC GTTGAGTTCA GTAATATCGG TTTAACAGCC GATGGGAAAA TCAAATTTGA TCTGCAAATT ATCGATGCTG CTGGAACAGC TATTGCGGGC GAATTTATTA ACCAAGGGAC TCGAGTCGTC GTCGCATGGG ACAGTGACAA AGACTATCCG GCATACAATG ATGCATCCTA CAGCAATCGC CGCATCAAAC TCAGCGAAGG CACATATGAT GCGAACTCAA AGACCTTCAC CATCACAGGC AATAACTTCG ATATGCCGAA TGATGCCGAT GGCAAAACCT TCGAGCTCTG GTCTGCCGTC GAGGTCTGCT TTAACAAGGG AGGCTACGGC GTGGCAGAAG TCATGATGAC TGAGTGTTCT GACAATACGC GTTCTATCGA GGTTAAAGAG GAAGCCTATC ACTTTGTATG GTCCGGTACG GGTATGGATG CAGACGCTCA GGCCGCCACA AGGCGCAGTA TCATAGATAC GACTAAGTGT CAGGGTTGTC ATAATCAAGA GGTGTTCCAT TATGATAACG GCGTCAACTG TCAGACCTGT CATACATCGG ACAAGACCAC TAAATCAGAT GACAGCTACC CCGGTGGGAA GAAACCGACC AGCTTCGCCT ATAAGGCCCA CGCGGCTGAG GGACACTACC TGAAATATGC AGGCGTAGAA TCCGGGACAG TGCTAAAAAC GGATTGTATG ACCTGTCACA CCGATGACGG TATAAAACTA GGTCGCGTGA GCGATAGAGT TTGGCGCTTT GGCCATAAAA CCTCTGGTGA AGATATCTGG GTATCATCAG ATGTGGGAAC CTGTCTCTCC TGTCATCAAA AGTACCTGAG TGATGCCGGG GCCAGCCATA TCGTCACTAA CGGCGGTATT TTAGATGGAA CCAGTGAAGA GGATGTTCAA ACTCGTGCCA GCGAAGCCTG CTCGACCTGT CATACACCTG AGCAATTAAT GAGCCTACAT GCTCATTAA
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Protein sequence | MERKIMDIKR KSSTLNLIAL TCSALLFGCG SDGKDGEDGK DGVVGVNIDS TATLSANIST ASVTDGLITI NFDLTNANGV AVLGLTKDHD LRFGIAQLTR VSETMGDTEV DRGFNWQAYI NAEKTPNPDW IPEGESHINP SNQYQANVEK AADCDECFLD NGDGSYAYTY QVNIAEVTEP LTVTYSADST QRATLELELP QVTANAFLDW QPSSESSEGI QTRDVVSIET CYTCHQVESL ALHGGRRIAI ENCASCHTST SGDPESGNSV EFTYMIHAIH KGNERMTSTA DGMVPAPYKI IGYGGGIHDY GKVMFPQGPA ADCSSCHVEG EGAPADADLF KADLSNTACV GCHTEKPSQN HSSTNCIGCH NSTDTYPGTG SAEKRHFDVM KAYSDARAMS VEFSNIGLTA DGKIKFDLQI IDAAGTAIAG EFINQGTRVV VAWDSDKDYP AYNDASYSNR RIKLSEGTYD ANSKTFTITG NNFDMPNDAD GKTFELWSAV EVCFNKGGYG VAEVMMTECS DNTRSIEVKE EAYHFVWSGT GMDADAQAAT RRSIIDTTKC QGCHNQEVFH YDNGVNCQTC HTSDKTTKSD DSYPGGKKPT SFAYKAHAAE GHYLKYAGVE SGTVLKTDCM TCHTDDGIKL GRVSDRVWRF GHKTSGEDIW VSSDVGTCLS CHQKYLSDAG ASHIVTNGGI LDGTSEEDVQ TRASEACSTC HTPEQLMSLH AH
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