Gene Ssed_1518 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1518 
Symbol 
ID5613392 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1806057 
End bp1807214 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content47% 
IMG OID640932384 
Producttranscriptional regulator, CdaR 
Protein accessionYP_001473257 
Protein GI157374657 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3835] Sugar diacid utilization regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTACTTTC TTGACTCAAG TTTGGCACAG CAGATTGTCG TTCGCACGAT GAAAATAATT 
GCCCATAATA TCAATGTCAT GAACCACCAC GGCATTATTT TAGGCTCAGG TGATCCCCAC
AGAATAGGGG CAACCCATGA GGGCGCCCTG CTCGCCATCA GTCAAAATCG TACCGTCGAG
ATCACGGCAG CGACCGCTTC AGATCTGCAC GGCGTCAAGG CAGGTATTAA CCTCCCGTTG
CATTATAAAG GTGAGATCAT AGGTGTTATC GGTATAACCG GCGAGCCTGA ATGCCTGCGC
AGCTATGGCG AACTCCTAAA GATGACTGCC GAACTTATTG TCGAACAGGC TAACTCATTA
GAATTGACAC TGTGGCAATA TAGACAGAAA GAGGAGTTTA TTTTTCAACT GATCAAATCT
GAAAATGGTT TTAGCACTCA TCTTCTGGAC TGGGCGGCTC AACTGGGAAT AGATCTGAGC
GAACCCCGTG TGGCCGCCGT TATTCAAGTG CAGGGAGATA CGGAGCAAAC CTCAGCAAAC
TCAATACTCA AGAAAGTGCT TAATCTATTG GAAAATCCTT CACGCGGTAA CTTAGTGGCC
ATGACTTCAA TGACAGAGTT AGTCATTTTA AAGCCCGCCT TTCTCGATGG TAAACAATGG
GATCCCGAAC TGGAGAGCCT TCGTATCGAT AAGTTACTGA CGCGCATTCC AAAAGAGATG
AATGTCAGGC TTAAAATTGC CTTGGGTCAC TTCTTTCCCA ATGCGGCCGA TATCAGCCGC
TCCTACCAAA CAGCCAAAGA GACACTCGAT GCCGGCAAGC TGCTACGTCC GGACGAAAGT
AAGTATCTTT ATGAGGATTT TTCACTGTTA GTTCTGCTCT CCGGGCTAAA AGGTGATTGG
CGTGGTCAGG AGTTGACTAC ACCTTATCAA GCCCTGCTCA ACGCCGATAA GAATGGTCAA
CTGAATAAGA CCTTATCAGT CTACTTACAA CACTTTGGCG ATCAGCAACT CTGCGCTAAT
ACCCTGTTCA TCCATAGGAA CACCTTAAGA TATAGGCTAG AGAAGATTCA GCAGATCACC
GGCGTTAATA TTCAGGAGCT GGACGGATTA TTGCAGCTTT ATTTAGGCCA GGTGCTGGTA
GCCACCCGGC CCGTCTGA
 
Protein sequence
MYFLDSSLAQ QIVVRTMKII AHNINVMNHH GIILGSGDPH RIGATHEGAL LAISQNRTVE 
ITAATASDLH GVKAGINLPL HYKGEIIGVI GITGEPECLR SYGELLKMTA ELIVEQANSL
ELTLWQYRQK EEFIFQLIKS ENGFSTHLLD WAAQLGIDLS EPRVAAVIQV QGDTEQTSAN
SILKKVLNLL ENPSRGNLVA MTSMTELVIL KPAFLDGKQW DPELESLRID KLLTRIPKEM
NVRLKIALGH FFPNAADISR SYQTAKETLD AGKLLRPDES KYLYEDFSLL VLLSGLKGDW
RGQELTTPYQ ALLNADKNGQ LNKTLSVYLQ HFGDQQLCAN TLFIHRNTLR YRLEKIQQIT
GVNIQELDGL LQLYLGQVLV ATRPV