| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1518 |
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| Symbol | |
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| ID | 5613392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1806057 |
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| End bp | 1807214 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932384 |
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| Product | transcriptional regulator, CdaR |
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| Protein accession | YP_001473257 |
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| Protein GI | 157374657 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3835] Sugar diacid utilization regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTACTTTC TTGACTCAAG TTTGGCACAG CAGATTGTCG TTCGCACGAT GAAAATAATT
GCCCATAATA TCAATGTCAT GAACCACCAC GGCATTATTT TAGGCTCAGG TGATCCCCAC
AGAATAGGGG CAACCCATGA GGGCGCCCTG CTCGCCATCA GTCAAAATCG TACCGTCGAG
ATCACGGCAG CGACCGCTTC AGATCTGCAC GGCGTCAAGG CAGGTATTAA CCTCCCGTTG
CATTATAAAG GTGAGATCAT AGGTGTTATC GGTATAACCG GCGAGCCTGA ATGCCTGCGC
AGCTATGGCG AACTCCTAAA GATGACTGCC GAACTTATTG TCGAACAGGC TAACTCATTA
GAATTGACAC TGTGGCAATA TAGACAGAAA GAGGAGTTTA TTTTTCAACT GATCAAATCT
GAAAATGGTT TTAGCACTCA TCTTCTGGAC TGGGCGGCTC AACTGGGAAT AGATCTGAGC
GAACCCCGTG TGGCCGCCGT TATTCAAGTG CAGGGAGATA CGGAGCAAAC CTCAGCAAAC
TCAATACTCA AGAAAGTGCT TAATCTATTG GAAAATCCTT CACGCGGTAA CTTAGTGGCC
ATGACTTCAA TGACAGAGTT AGTCATTTTA AAGCCCGCCT TTCTCGATGG TAAACAATGG
GATCCCGAAC TGGAGAGCCT TCGTATCGAT AAGTTACTGA CGCGCATTCC AAAAGAGATG
AATGTCAGGC TTAAAATTGC CTTGGGTCAC TTCTTTCCCA ATGCGGCCGA TATCAGCCGC
TCCTACCAAA CAGCCAAAGA GACACTCGAT GCCGGCAAGC TGCTACGTCC GGACGAAAGT
AAGTATCTTT ATGAGGATTT TTCACTGTTA GTTCTGCTCT CCGGGCTAAA AGGTGATTGG
CGTGGTCAGG AGTTGACTAC ACCTTATCAA GCCCTGCTCA ACGCCGATAA GAATGGTCAA
CTGAATAAGA CCTTATCAGT CTACTTACAA CACTTTGGCG ATCAGCAACT CTGCGCTAAT
ACCCTGTTCA TCCATAGGAA CACCTTAAGA TATAGGCTAG AGAAGATTCA GCAGATCACC
GGCGTTAATA TTCAGGAGCT GGACGGATTA TTGCAGCTTT ATTTAGGCCA GGTGCTGGTA
GCCACCCGGC CCGTCTGA
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| Protein sequence | MYFLDSSLAQ QIVVRTMKII AHNINVMNHH GIILGSGDPH RIGATHEGAL LAISQNRTVE
ITAATASDLH GVKAGINLPL HYKGEIIGVI GITGEPECLR SYGELLKMTA ELIVEQANSL
ELTLWQYRQK EEFIFQLIKS ENGFSTHLLD WAAQLGIDLS EPRVAAVIQV QGDTEQTSAN
SILKKVLNLL ENPSRGNLVA MTSMTELVIL KPAFLDGKQW DPELESLRID KLLTRIPKEM
NVRLKIALGH FFPNAADISR SYQTAKETLD AGKLLRPDES KYLYEDFSLL VLLSGLKGDW
RGQELTTPYQ ALLNADKNGQ LNKTLSVYLQ HFGDQQLCAN TLFIHRNTLR YRLEKIQQIT
GVNIQELDGL LQLYLGQVLV ATRPV
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