| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1453 |
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| Symbol | |
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| ID | 5610893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1723400 |
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| End bp | 1724113 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640932319 |
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| Product | 3-oxoacid CoA-transferase |
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| Protein accession | YP_001473192 |
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| Protein GI | 157374592 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
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| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00126643 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAGGAC TCAATAAAGT TGTTGGCAGT TATGAAGAAG CTCTTAAAGG CTTAAGTAAT
GATATGACCA TAATGGTCGG CGGGTTTGGC CTGTGCGGCA TTCCTGAAGG GCTTATCTCA
CAGATGGTTA CGTCCGGAGT CAGCGGCCTG ACCGCTATAT CAAACAATGC CGGAGTCGAT
GATTTCGGCC TTGGCTTACT ACTTAAGAGT CGTCAGATAG ATACCATGAT CGCCTCCTAT
GTCGGCGAAA ACGCCACCTT CGAGCAGCAG ATGCTATCGG GCCAGCTGAA GGTGATTTTG
ACTCCTCAGG GGACGCTGGC AGAGAAAATC CGTGCGGGCG GCGCCGGGAT CCCGGCCTTC
TTTACCGCAA CGGGCTATGG TACCCCTATC GCCGAAGGTA AAGAGACCCG GGAGATCGAT
GGTCGCCACT ACGTGCTCGA GCCTGCATTG ACTGCCGACT TCGCCTTAGT ACGGGCATGG
AAAGCCGATA CCATGGGGAA TTTAGTCTTC CGTAAAACCG CGGCAAACTT CAACCCTATG
ATGGCTACGG CTGGCAAGAT CACTGTGGTT GAGGCGGAGC AGATCGTCGA GCCCGGAGAG
TTAGACCCGG ATCATATCCA CACACCCGGT ATCTACGTGA ACCGTGTCAT TCAGGGCAAG
TTTGAGAAAC GTATCGAGCA ACGTACCGTT AAAGCCGCAC CGGTTATTCT TTAA
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| Protein sequence | MAGLNKVVGS YEEALKGLSN DMTIMVGGFG LCGIPEGLIS QMVTSGVSGL TAISNNAGVD
DFGLGLLLKS RQIDTMIASY VGENATFEQQ MLSGQLKVIL TPQGTLAEKI RAGGAGIPAF
FTATGYGTPI AEGKETREID GRHYVLEPAL TADFALVRAW KADTMGNLVF RKTAANFNPM
MATAGKITVV EAEQIVEPGE LDPDHIHTPG IYVNRVIQGK FEKRIEQRTV KAAPVIL
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