Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1427 |
Symbol | |
ID | 5610289 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1690454 |
End bp | 1692199 |
Gene Length | 1746 bp |
Protein Length | 581 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640932293 |
Product | 5'-nucleotidase |
Protein accession | YP_001473166 |
Protein GI | 157374566 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.232685 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCACA GATACACGCT TAAGCTCGCC CATATCAACG ACACACACTC CCATTTCGAT TCGAGTCGGG TGCATTTTTC TGTCGATACC CAGGGAAAGT CTTATGACAT CTATAGCCAC AGTGGCGGCT ACGCAAGAAT TCAATATCAG CTAACAAAGG CAAGAGAGGA AGCGGCATCG GCCGGGCAAG AGTTTCTCTT TCTTCATGCC GGTGATAGCT TTCAAGGCAC TCTCTATTTT AACCATTTTA AGGGAGTGGC CAACGCACAC CTGCTCAATC TGCTACAACC CGATGCTATG GTGCTGGGCA ACCATGAAGT CGATGATGGC AGTGCACCTA TCTTAGCGTT TCTTAACGAT ATATCATTTC CGCTGCTGGC CGGAAATATG GATATGAGCC AGGAAGCGTC AGATAAGCCC TCCCCTATCA AAGGACATAA GCGGCTATTG GATTATGATG ATGCCAACGG CAGAGCAAAA GTTCTGATTA AACCGCTAAA AGATAAGCAA GTTGCCATTA TTGGGATCAC TTTGGATCAG ATGGCCGAGA TAGCGCGTCC CGATCCCGAC ATGATTTTTA TCAATGCCAT CGAAACGACT CGAAATACAG TAGCGCATCT CAAGACACAA GGCATAGACC ATATTCTGGT CCTTAGTCAC CTCGGATTCA ATCAGGATAA GATTTTAGCC GAGCAGGTTG ACGGTATCAG CCTTATCGTT GGCGGCCACA CACATACATT GCAAGGTGAG TTTAAAGCCT TAGGTCTAAG CTCGACTTCC TATGGAGTCA GAGTCAATAA TACAGCCATT CTACATGCCG GAAAGCACGC CGAAACAATT GGTATTGCGG ACATAGAATT CAGTGAGAGC GGACAGGTTA TCTCACTCGA TGGTCATAAC TACTTCATGC TCGATGATCA GTTTATTCTC GAATCTAAGC ACGGCATTAC ACCTTCAGAT TACGATGCGA TCAGAGCCTA CCTGAGCAGT CATCCAGGGA TCCGTGGGGA CAAAGAGGAT GCTTTGGTCA CACAAGTGAT CAACGCTCAA TACCGCCCAG CCATTGAAGC ACTCGAGAAA CAGGTGCTGG GCTTTATTCC CCGAAACCTG GTTCATACCC GGTTACCCAG TAAATCCCTT CCACATGGAA GTGAAATAGC CCCTTTGGTG TGTAAGAGTA TCTATCATGA AGCGAAACTC ATGTATCCCA GAGTCGATTT TGCCCTTCAC AATGCCGGGG GCGTTCGACA GTCTCTTAAT AAAGGGGAAC TCACAGTTGC CGATGTTGCC GGGCGTCTGC TGCCATTCGA GCTCTCCCTG GTTAAATATC AGATAAGAGG GCAACACCTA TATGAGGCAA TTGAATCAGC AATTAACTCT GCAACCAATA ACAGCGTGAC TGGCACGGGG GCAGGCAGCT TTCCCTACAC TTACGGTTTA AAGTATTTTT ATGACGGCCG TAAGCCCCAG GGGCAGCGCA TTTTGTCACT CGAAGTATTA CGCAGTGACG GTGCAGCAGA CGAGCCTGAG GTGTGGGAGA GTGTCGACAG AGAGCAACAC TACTTTGGTG TGTCATCGGC CTACACAGCT TCGGGAAAAG AGGGATATTA TCCACTGCTC CAAGCCTGCT GGCAGCAAGC GATTGAGGGA CTCACTCTCC CCTCAGCTTT TATTCGCTTC ATGAGCCATG AGCAGTCACT CAAGCAAGAT ATCTTGCCCC AAATCGAATA TATCAGCCAC ATCTAG
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Protein sequence | MPHRYTLKLA HINDTHSHFD SSRVHFSVDT QGKSYDIYSH SGGYARIQYQ LTKAREEAAS AGQEFLFLHA GDSFQGTLYF NHFKGVANAH LLNLLQPDAM VLGNHEVDDG SAPILAFLND ISFPLLAGNM DMSQEASDKP SPIKGHKRLL DYDDANGRAK VLIKPLKDKQ VAIIGITLDQ MAEIARPDPD MIFINAIETT RNTVAHLKTQ GIDHILVLSH LGFNQDKILA EQVDGISLIV GGHTHTLQGE FKALGLSSTS YGVRVNNTAI LHAGKHAETI GIADIEFSES GQVISLDGHN YFMLDDQFIL ESKHGITPSD YDAIRAYLSS HPGIRGDKED ALVTQVINAQ YRPAIEALEK QVLGFIPRNL VHTRLPSKSL PHGSEIAPLV CKSIYHEAKL MYPRVDFALH NAGGVRQSLN KGELTVADVA GRLLPFELSL VKYQIRGQHL YEAIESAINS ATNNSVTGTG AGSFPYTYGL KYFYDGRKPQ GQRILSLEVL RSDGAADEPE VWESVDREQH YFGVSSAYTA SGKEGYYPLL QACWQQAIEG LTLPSAFIRF MSHEQSLKQD ILPQIEYISH I
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