| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1398 |
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| Symbol | |
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| ID | 5613296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1656843 |
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| End bp | 1658339 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640932263 |
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| Product | NADH dehydrogenase (quinone) |
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| Protein accession | YP_001473137 |
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| Protein GI | 157374537 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTGGA GTACGGCCCT GCCATTGTTG GTCCTCGGCA GCTCTCTCAT ACCGGGATTG
ATGATCTTCT TTTTGTCCGA GGAGCATGTT GTTGCCCGCA CAGCGCTTAA TTTGGCCAGT
GCGTTACTTA AAATAGTGCT GATTGGGGGA ATGTTTTGGG GCATGTTACA CGGCTACCAT
TACGAGTCAC GCCTACCGCT ACTGCCTGGA CTCGATTTGG TACTGCGTGC CGAACCACTG
TCGATGCTTT TCGTGCTGCT TTCCGCCGGA TTGTGGCTGG TTACTACCGT TTATGCCATT
GGTTATCTGG AGGAGTCACC TTACCGCAGC CGCTTTTTCG GCTTCTTCAG TCTGTGTGTA
ACGGCTACTG TCGGTATTGC TCTGGCGGGC AACCTGATGA CCTTCTTGGT GTTTTATGAA
CTATTGACCC TGTGCACTTA TCCGTTGATC GTACATCGCG GAACCGAGGT GGCGCGAAGA
GCTGGCAGAA TTTATCTGAC CTATACTATC GCCGGTGGTG CATTGCTGCT GCTGTCGTCG
GTGTGGCTCT ATACCCTTGC CGGCACCCTG GAGTTTACGG CTCGCGGGTT CCTGTCTGGT
CTCGATACCT CTCTGCACCC AACACTAATG TTAATCTTCG CATTGTTGAT CGCCGGGCTG
GGTGTAAAAG CGGCATTGCT TCCCCTGCAT GGCTGGCTAC CTCTGGCTAT GGTGGCACCG
GCACCGGTGA GTGCATTGCT GCATGCCGTG GCCGTGGTGA AGGCGGGGGC ATTCGGTATT
GTACGGGTCG TTTACGATGT GTATGGCATT GAGTTTGCCA CTGGTTTGGG GGTGACATTA
CCTTTGACGA TACTGGCTGC CGCAACTATT ATTTACGGTT CGCTGCGGGC CTTGTTTCAG
GATGAACTGA AGCGTCGGCT TGCGTTCTCT ACGGTCAGCC AGGTGTCATA CATAGTGCTA
GGCATCGCGG TTGCCGGTCC CGTCGCGACT ATTGGCGGTC TGATCCATCT GGTGCATCAG
GGAGTACAGA AAATCACCCT GTTTTTTTGC GCAGGAAACC TCGCAGAGAC GCTGGGAATT
CACAAGATCA GTGAGATGAA TGGAGTCGGT TGGCGCATGC CGTGGACCAT GTCAGCATTC
ACGATTGGTG CCTTTGGTAT GATAGGGGCG CCGCCGCTGG CAGGTTTTTT CAGCAAGTGG
TATCTCGGAC GAGGGGCATT GGATGCCGGG CAAGACTGGG TGATATTGAT TCTGGCAGGT
AGCAGTATAC TCAATGCTGC CTACTTTCTG CCGATATTGT ATATCGCTTG GTTTAAGAAG
CCTCCCGACA GCTGGCCGGC AGAACGTACT TTCGGACGCC AAGAGACAGC GTGGGCGTTA
CTGCTTCCCC CATTGGTTAC CGCTTTAATG ACATTGGTTC TGGGGCTGTT AGCATCTGCG
CCGTTTGGCC TATTGGAATG GGCTCGTTTA ATTGTGAACC GAGGACTCGC GCAGTGA
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| Protein sequence | MNWSTALPLL VLGSSLIPGL MIFFLSEEHV VARTALNLAS ALLKIVLIGG MFWGMLHGYH
YESRLPLLPG LDLVLRAEPL SMLFVLLSAG LWLVTTVYAI GYLEESPYRS RFFGFFSLCV
TATVGIALAG NLMTFLVFYE LLTLCTYPLI VHRGTEVARR AGRIYLTYTI AGGALLLLSS
VWLYTLAGTL EFTARGFLSG LDTSLHPTLM LIFALLIAGL GVKAALLPLH GWLPLAMVAP
APVSALLHAV AVVKAGAFGI VRVVYDVYGI EFATGLGVTL PLTILAAATI IYGSLRALFQ
DELKRRLAFS TVSQVSYIVL GIAVAGPVAT IGGLIHLVHQ GVQKITLFFC AGNLAETLGI
HKISEMNGVG WRMPWTMSAF TIGAFGMIGA PPLAGFFSKW YLGRGALDAG QDWVILILAG
SSILNAAYFL PILYIAWFKK PPDSWPAERT FGRQETAWAL LLPPLVTALM TLVLGLLASA
PFGLLEWARL IVNRGLAQ
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