| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1397 |
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| Symbol | |
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| ID | 5613295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1655341 |
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| End bp | 1656846 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640932262 |
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| Product | NADH dehydrogenase (quinone) |
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| Protein accession | YP_001473136 |
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| Protein GI | 157374536 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTCC CGACAGGGGC CGGGAGTGAT CACTGTAAAC GGCTGAGTTT GCTGCCTATG
GAGTTAATAT TGGGGGACGT CCCGTGGATT GTGGTGCTGA TCATCTTACC TTTAATGGGG
GGCATGGCTT GCTTCCTGTT CCCGATAATA TCTAAATCAC TGGGTCTGCT TATTTCGCTG
GCAGTTGTCG CTTGTGTGTG GGGGCTGGGT TGGCAACTGA GCGAGGAGGG GGCGCAGCGT
TACGCCGTTG GTGGCTGGGG CGCCCCCCTG GGTATCGACC TTTACGCCGA TGGGCTGAGT
CTGCTTATGG TGGCGGTGTC GGCCTTGGTG GGATTGGGTA TCAGCGTCTA TTCCAGCGGT
TATTTCAGTC GCGATAAAGC GAACCATTTT TGGCCGCTAT GGTTGTTCCT GTGTGGAGCA
CTGAATGCAC TGTTTCTATC TTCTGATATC TTCAATCTCT ATGTCACACT GGAATTGCTG
GGATTGACGG CAGTGGCCCT TGTGGCATTG GCCAATGGGG CGGAAGCCCT GACCTCAGCC
ATGCGTTATC TGCTGGTCAA CCTGATGGGC TCCCTGTTTT ACCTGCTGGG TGTTGCCTTT
CTTTATCACA GTTTTGGCAG TCTGGATATT GCAATACTGG CGCAACGGGC GGAGCCGTCG
CCTGCAGTGT GGGCGGCGGT AGGATTGATA AGTACCGGCC TGCTTCTTAA GACTGCGCTT
TTCCCTATGC ATTTCTGGTT ACCGGCAGCT CATGCCTGTG CTCCGGCGCC GGTGAGTGCA
CTGTTGTCCG CATTGGTGGT CAAGGCTTCC TTCTATATTC TGCTGCGCAT GTGGCTGGAG
ATCTTTCCAA TGGTCGGTAC TTCATTCGCT CAGTTACTGG GGTTGCTTGG CGCGGCGGCA
GTCCTTTGGG GCGGGATCCA GGCACTGCGA CAGACACGAC TTAAATTGCT TATTGCCTAC
TCGACGGTAT CGCAGCTAGG TTATCTGTTT TTGGCTTTTC CGTTGGGGAT AAGTATTGCC
TGGAAGGGAG CGCTATATAT GTTGCTGTCT CATGCTGTGG CCAAAGCGGC AATGTTCATG
GCGGCGGGAA ATATACTGGC TGCCGGAGGA GATGATCGCA TCGCGGCTCT CTCTTCGATA
GCACAGCGTC TGCCCCTTAC TTTGACAGCA TTTGCCCTCG CGGGGATCAG TATTATGGGT
CTACCGCCTA GTGGCGGGTT CATCGCCAAG TGGTTATTGC TGGAGGCATC AATACAGTCG
GGGCAGTGGT GGTGGGGAGT TATTCTCCTT CTCGGCGGGT TACTGGCCGC TGCTTATGTT
TTTAAGGTCG TAGGTCATGT GTTTACCCAA GCCGAGCAGA CACTCGAGGC CCGAGATGTG
CCGGCCAGAA TGGAGTGGAC CGCTCTGGGG CTGGCATTGG TGGTTATCTT TTTGGGGCTG
TTCGCTTCCT GGCCGTTGGC GCTGATGGAG ATTGGTTCCC CCTTTGGCGA AGGAGGTACC
GGATGA
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| Protein sequence | MNFPTGAGSD HCKRLSLLPM ELILGDVPWI VVLIILPLMG GMACFLFPII SKSLGLLISL
AVVACVWGLG WQLSEEGAQR YAVGGWGAPL GIDLYADGLS LLMVAVSALV GLGISVYSSG
YFSRDKANHF WPLWLFLCGA LNALFLSSDI FNLYVTLELL GLTAVALVAL ANGAEALTSA
MRYLLVNLMG SLFYLLGVAF LYHSFGSLDI AILAQRAEPS PAVWAAVGLI STGLLLKTAL
FPMHFWLPAA HACAPAPVSA LLSALVVKAS FYILLRMWLE IFPMVGTSFA QLLGLLGAAA
VLWGGIQALR QTRLKLLIAY STVSQLGYLF LAFPLGISIA WKGALYMLLS HAVAKAAMFM
AAGNILAAGG DDRIAALSSI AQRLPLTLTA FALAGISIMG LPPSGGFIAK WLLLEASIQS
GQWWWGVILL LGGLLAAAYV FKVVGHVFTQ AEQTLEARDV PARMEWTALG LALVVIFLGL
FASWPLALME IGSPFGEGGT G
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