| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1381 |
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| Symbol | |
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| ID | 5612702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1640500 |
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| End bp | 1644906 |
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| Gene Length | 4407 bp |
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| Protein Length | 1468 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932246 |
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| Product | Signal transduction histidine kinase-like protein |
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| Protein accession | YP_001473120 |
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| Protein GI | 157374520 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.770562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGATA AGCCGAATGA AATAGATAGC CCTGCTAAAA GTAAGTACGG CTCTTTGAGT
CTCAGTTTGA TTCTATGGTT TCTGATGCTC TCATTAATCC CATTGGTTGG AGTTTCCTGG
TTTAGTTATG AGCAAGCGAA ACAGAGCCTG GTCAATGAGT TACAAAAGGA GCTGGCTCAG
TCCTCTTTAT TGAGCACAAA AGCCATTCAG AGCTGGTTTC AGTATCGAAT GGTCGATCTT
AATGTTGAAG CCGCTTCACC CAACAACTCC CTCTTACTGC AGTCACTTAT CGCGGGGCTG
GAGAGGAGTA AACTGGCGGG AGATGAATAT GTTCGAACTT CTGACTGGGA CCAGACAGTC
GATACCTATC AGCATGAGCT TCTGGCTAAG GCTCATCAGT ATGACTATAT CAGTGATCTG
TATTTAATTG ATATGCAGGG GAATATCCTC TTCACCGTGA CTAAAGAGGA GGATCTTGGT
CAAAATATTT TTAGTGAAAA AAACAGTGAT TCGCTGTTTT CGACCAGTGT CCGCTTAGCT
CTTGATACCG GCGATGCTAA TTTTTCCGGA TTAGAACGTT ATGAAGCGTC ATCTGAGTCT
ATTGCGGGGT TCGTCAGTGC ACGCCTGTTT GATGAGTTTG GAGAACCCAT CGGGGTTTTC
GTTATCCAGT TAAAGTTTGA GAAGATACTG AATTTATTAG GCTCTACTTT CGGTGTGAAT
AGCTCGTTAT CACACTACCT GGTAGCTGAA GATGGCACAT TAAGAACGCC CATAAAAGAT
AATTGGAATG AAGTACTTCT GAGAAAAATT GATACTTTCC AATTTAACAT CTGGCGTAAC
AAACGTAGAT TGCATGAAGG CGATAGCAGG AATGCTGGTA CGGATGAGCC GAGTATAAAA
GAGTCGGCTT CTGAGTATAT TGGCCCTAAC GGCCAAGAGG TTATCGGCAT GGGTCAGGAA
GTCAAAATGG CTAATGTGAC CTGGCTACTC ATTAGTGAAT TGGAGCGGGA TGAAGCGTTA
TCGGCGATAA ACTGGTTAGG CAAGATAACT ATGTTTTTAG TCATGATTAC CGCTTTAGTC
GTCATTATTG CGGCTGTCTA TATCACCCGA AAAATCACCT ATCCGATTAA TGTGTTAGCG
GCGGCGAGCC TGAAGATGGC CTCAGGAAAG GAGGTGGGTG AACTAACGAT AGATAGTCAC
AATGAGATAG GCCTACTGAC CGATGCATTT AACTTTATGG TCGATGCAAG AACAAGCCAT
GAAAAGAAGT TGTACAAGAC TAAAGAGCAG CTGCAACAGG CATTGGAGAG TTTAGAGGGG
CAAAAATTTG CTCTCGATCA ACACTCCATC GTCGCGGTGA CAGATCTGAA GGGTACGATC
ACCTATGTCA ACCAGCTTTT TACAGAGATC AGTGGATATG CATCCGAAGA GCTTCTGGGC
CGGAATCACA GAATACTCAA CTCGGGTCAT CATCCCCGGG GCTTTTTCAA GCAGATGTAT
GAGGTGATCA CTAAGGGAGA GGTATGGAAC GCCGAGATAT GTAACAGAGC CAAAAATGGC
ACCTTGTATT GGGTTGATAC GACAGTTGTT CCACTTAAAG ACGCTGAGGG TCACCCCCAT
AGTTATATTG CAATTCGCAC CGATATCACC GAGAGAATGA CCGCATCTAT AAAGGCGAAT
GAAGCGCTGT CTCTGATGCA TTCAGTGCTC GAATCTACAG ATAACGGCAT CTTAGTTACC
AGCATTCAGG GCAAGATACT GCAGGTCAAT AATCGATTTA TGGAACTCTG GAAGATAGAT
GACAAAACCT TGATTGGACG CGATGACTCA GAGATTGCTC ACTATGCCAA GTCTCAGCTT
GTGGATTCCG CGTCTTTTAT ACAAGGCATT GAGCGGCTAT ACAGGGATCC GGAGCTTGAG
TTATTCGATA CTTTAGCGTT TATTGATGGG AGGGTGTTTG AGCGTGTTTC ACTTCCTATG
ATGTCAGAAG GTGGGGTGCT TGGCAGGGTC TGGAGTTTTC GGGATGTTAC CGAGAGTATG
AAGATTCGGA GTGAGCTGAT GCTGGCTAAA GAGGGAGCCG AGCTGGCGGT AAAAGCCAAG
AGTGAGTTCT TGGCCAGTAT GAGCCATGAG ATACGAACGC CGATGAATGG TGTTCTGGGT
ATGTTGGGCT TGTTACTCAA TACTAAATTG TCTGATTTTC AGCGTCGAAG AGTGAGTATC
GCCCAATCGA GTGCAGAATC TTTACTGACG CTTATCAATG ATATTCTCGA CTATTCTAAA
ATTGATGCCG GTAAGCTTGA GCTGGAAAAT TTAGATTTTA ATTTACGGGG TATGCTGGGG
GAGTTTGCCG AGGGCATGGC TCACCTGGCT CAGGATAAAG ATCTTGAACT TATTCTCGAC
GTCAAAGGCG TCGAGTATTC TATGGTCAAT GGCGACCCAG GACGTCTGAG ACAAGCATTA
ACCAATCTCA CGGGCAATGC GATTAAGTTT ACCAAGCAGG GCGAAGTGGT GATTAAGGCA
GAGCTTGTTC CCTGCGATGA TGAGACATTG TGGCGTTTAA AATGTTCGGT TTCAGATACC
GGCATTGGTA TCGCGGAGGA TAAAATTGAC TCACTGTTTG ACTCTTTCAG TCAGGTGGAT
GCTTCAACGA CCCGAAAGTA TGGCGGAACC GGGTTAGGAC TGGCCATTGT CGATAAAGTC
TGCAATCTGA TGGGGGGCAG TGTGTCGGTA GAAAGTGAAG AGGGGGTGGG GAGTTGTTTT
CGTTTCGAGG TGAGTTTAGG GCGAAGTACT CACTCCCAGT TGGTTGTGCC TAAGGTCGAT
ATTACCGCCT TAAAGTTATT GGTCGTCGAT GATAATGAAA CCAACAGAGA GGTGATCCGT
GGCCAGCTCG AATACTGGGG GGCCGATGTC GTCGAAGCTA AGAGTGGTCC GCAGGCCATT
CAGATATGTG AAGAGTATTT TGAAGATCCG GATAAGCAGC TGTTCGATGT GGCATTTTTA
GATATGCAGA TGGCCGATAT GGATGGAGCT GAGCTGGGAA AGAGGTTGAA AGCCGACAGC
AGATTCGAAC CGATTAAACT GGTAATGATG ACCTCTATGT CACAAATCGG TGATACACAC
TTCTTCGCCG AACTCGGTTT TAGCGCCTAT TTTCCTAAGC CTACAACGAC ATCCGATCTA
TTTGACGCCT TATCGATTGT TTCTGAAGGG GGGCAGGCTC TGCAAGAGGC TCAGCCGCTG
GTGACTCATC ATTATTTACA GTCATTGAGC CAGGTTAAGA GGGGAGAGGT GTTTAGCTGG
CCCGAAGATA CCCATATTCT TTTAGTCGAA GATAACTACG TTAATCAGCT GGTTGCTAAG
GGGATCTTAG AAGACTTAGG TTTATCGACC GAGGTTGCCG ATAATGGAGC CTTGGCATTG
GAACAATTGC TGCGGGGTGG CAGCAAGCCA TACTCACTGA TATTGATGGA CTGTCAAATG
CCCGAGCTCG ATGGCTACGA GACAACCAGA CAGATCCGAG CCGGAAATGC GGGTGAACAA
TATCTTGATA TTCCCATTGT GGCGATGACT GCAAACGCCA TGATGGGCGA TAAAGAGAAG
TGCTTAGATG CCGGGATGAG CGACTACCTC TCTAAACCTA TCGATTCAGA TAAACTGCGT
TTGAAACTAT ATCAATGGCT TACCGTTAGT CATGGTGAGC AAGGAGGAAA AGAAGCGGAT
CTGTTTTCTC CACCAGTTGA ATCAAAGCCC TCTATACTTG ATGAACAAGA CGCTTCAGTT
GGTGAAGTCC CAGTCTGGGA TAGAGAGGGC TTAATGAAGC GAGCCATGGG GAAGGAGTCA
CTCTTTAATT CAATCGTGAC CCTTTTTATG GAGGATATTC CTGCTCGGGT AGATTCACTC
TTGCTTGCAG CAGAGAGTGA AGATATCGAG CAGAGCAGGC AGTTGGCGCA TACGGTTAAG
GGCGTTGCGG CTAATGTTGG TGCAGAAATG CTGCGGGCAG AGGCCGAAAA GATTGAGTCA
GCGGCAAAAA CTTACGATAT CGATTCGATT AAGAAAGATA TTCCAGTTTT TTGTTTGGCC
TATAGCGCAT TGAAAGCCTG TATCGAAGAT TTTCAACGTA ACAATGTCTC GCAACTTCAG
CAAGATAAAT GCATGAGTGA GGATGCGTTA AATTTGATGC TGGAGGATAT TGGTAACCTT
CTCGACGATG GCAGTTATAT TGATGTGGAT GATTTTTCCA GTTTAAAGTG GGCGACCGAA
AATGAAGCCA TGCAGGAACT CTGTAACCAG TTACTAAATC AACTGGCCGA CTTTGAGCAT
ACCGAGGCCA CAGCGACATT AAGACTGTTA ACTAAAGCGC TAACTGAAAG TCACTCGAAA
CTCAACAAGG ACTTGGTTAA TGAATGA
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| Protein sequence | MDDKPNEIDS PAKSKYGSLS LSLILWFLML SLIPLVGVSW FSYEQAKQSL VNELQKELAQ
SSLLSTKAIQ SWFQYRMVDL NVEAASPNNS LLLQSLIAGL ERSKLAGDEY VRTSDWDQTV
DTYQHELLAK AHQYDYISDL YLIDMQGNIL FTVTKEEDLG QNIFSEKNSD SLFSTSVRLA
LDTGDANFSG LERYEASSES IAGFVSARLF DEFGEPIGVF VIQLKFEKIL NLLGSTFGVN
SSLSHYLVAE DGTLRTPIKD NWNEVLLRKI DTFQFNIWRN KRRLHEGDSR NAGTDEPSIK
ESASEYIGPN GQEVIGMGQE VKMANVTWLL ISELERDEAL SAINWLGKIT MFLVMITALV
VIIAAVYITR KITYPINVLA AASLKMASGK EVGELTIDSH NEIGLLTDAF NFMVDARTSH
EKKLYKTKEQ LQQALESLEG QKFALDQHSI VAVTDLKGTI TYVNQLFTEI SGYASEELLG
RNHRILNSGH HPRGFFKQMY EVITKGEVWN AEICNRAKNG TLYWVDTTVV PLKDAEGHPH
SYIAIRTDIT ERMTASIKAN EALSLMHSVL ESTDNGILVT SIQGKILQVN NRFMELWKID
DKTLIGRDDS EIAHYAKSQL VDSASFIQGI ERLYRDPELE LFDTLAFIDG RVFERVSLPM
MSEGGVLGRV WSFRDVTESM KIRSELMLAK EGAELAVKAK SEFLASMSHE IRTPMNGVLG
MLGLLLNTKL SDFQRRRVSI AQSSAESLLT LINDILDYSK IDAGKLELEN LDFNLRGMLG
EFAEGMAHLA QDKDLELILD VKGVEYSMVN GDPGRLRQAL TNLTGNAIKF TKQGEVVIKA
ELVPCDDETL WRLKCSVSDT GIGIAEDKID SLFDSFSQVD ASTTRKYGGT GLGLAIVDKV
CNLMGGSVSV ESEEGVGSCF RFEVSLGRST HSQLVVPKVD ITALKLLVVD DNETNREVIR
GQLEYWGADV VEAKSGPQAI QICEEYFEDP DKQLFDVAFL DMQMADMDGA ELGKRLKADS
RFEPIKLVMM TSMSQIGDTH FFAELGFSAY FPKPTTTSDL FDALSIVSEG GQALQEAQPL
VTHHYLQSLS QVKRGEVFSW PEDTHILLVE DNYVNQLVAK GILEDLGLST EVADNGALAL
EQLLRGGSKP YSLILMDCQM PELDGYETTR QIRAGNAGEQ YLDIPIVAMT ANAMMGDKEK
CLDAGMSDYL SKPIDSDKLR LKLYQWLTVS HGEQGGKEAD LFSPPVESKP SILDEQDASV
GEVPVWDREG LMKRAMGKES LFNSIVTLFM EDIPARVDSL LLAAESEDIE QSRQLAHTVK
GVAANVGAEM LRAEAEKIES AAKTYDIDSI KKDIPVFCLA YSALKACIED FQRNNVSQLQ
QDKCMSEDAL NLMLEDIGNL LDDGSYIDVD DFSSLKWATE NEAMQELCNQ LLNQLADFEH
TEATATLRLL TKALTESHSK LNKDLVNE
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