| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1354 |
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| Symbol | |
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| ID | 5611734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1609996 |
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| End bp | 1611102 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932219 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001473093 |
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| Protein GI | 157374493 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG2703] Hemerythrin
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR02481] hemerythrin-like metal-binding domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATTCGT TTCAGTGGGA TGGACACTTC GTTACCGGCT TAGATGATGT TGACAGGCAA
CACCACCAGC TCGTCAACCT GATTAACCGG TTTGGGCACC TGCTCGCCAG TAATAATTTG
CAATCATGCG ATATCGACCA GGTACTCAGT GAGTTGTGGC GCTATACTCA GCATCACTTT
CAAGATGAAG AAGCCCTGAT GCAAGCCAAA GGGGTCGATG AGCGACACGT TAAGCTGCAA
GAAGAGGCCC ACAATTACTT CTTAAGTGAG ATGCAAGCGA TTCAGGCTTC AACCTCTATC
GGCAACCCAG AGACGCTTAA ATACCTTCTG GATTTTCTGA CTCAGTGGTT GGCCTACCAT
ATCTTAGGTG CCGATCAGAA TATGGCCAGA CAGATTGCCG CCATAGACTC AGGATTAACA
CCGGAACAAG CCTATGCAAG AGAGGAGTCT CAAGCCGATA GTGCCACAGC CCCTCTACTC
AAGGCGCTCA ATGGCCTGTT TAAACAGGTA TCCCAACGTA ACAAACAGCT AATAGAGTTT
AATCACTCCC TCGAAGAGAA GGTTCAGCAG CGCACGCAAG AGTTAATCGA CGCCAATGCC
CACCTGGAGA AGCTCTCCGT TACTGATGTC TTAACCGGTT TACCCAACCG ACGTTTCGCC
ATGGAGAAGC TCACTCAGCT TTGGCAGGAA TCCGTGCAAA GCCAACAACC ACTGGCATGT
ATGATGTTAG ATGCGGACCA CTTTAAAACC GTTAATGATA CTTATGGGCA TGATGCCGGC
GATAGGGTGT TATGCGAGTT ATCCAGAGAG TTGCAACATG CCGTTCGTAC CGATGACATC
GTGTGCCGTT TAGGGGGAGA TGAATTTGTT ATCATCTGCC CGGCAACTGA TCTAAATGGT
ATCAGGCACA TTGCCACTCA GGTTCACGAG AAAATCGCCG CCATGACGGT CTCATTCGGA
AGCGGCAGCT GGCAGGGCAG CATTAGTGTT GGGGTCTCTT CCAGGACAGA TCAGATGCAA
GATTACAGTG AACTGATAAA GCGGGCGGAT GAGGCTGTCT ACCTGGCTAA GCAAGCTGGC
AAAAATTGCG TCAGGCGCGC TCAATAA
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| Protein sequence | MDSFQWDGHF VTGLDDVDRQ HHQLVNLINR FGHLLASNNL QSCDIDQVLS ELWRYTQHHF
QDEEALMQAK GVDERHVKLQ EEAHNYFLSE MQAIQASTSI GNPETLKYLL DFLTQWLAYH
ILGADQNMAR QIAAIDSGLT PEQAYAREES QADSATAPLL KALNGLFKQV SQRNKQLIEF
NHSLEEKVQQ RTQELIDANA HLEKLSVTDV LTGLPNRRFA MEKLTQLWQE SVQSQQPLAC
MMLDADHFKT VNDTYGHDAG DRVLCELSRE LQHAVRTDDI VCRLGGDEFV IICPATDLNG
IRHIATQVHE KIAAMTVSFG SGSWQGSISV GVSSRTDQMQ DYSELIKRAD EAVYLAKQAG
KNCVRRAQ
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