| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1332 |
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| Symbol | |
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| ID | 5610607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1584409 |
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| End bp | 1585647 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932197 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_001473071 |
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| Protein GI | 157374471 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.228796 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAGAA TAACCAAAGT GACAGAGACT GACGGTCTGA AGAAACAACA GATTGATAGC
TTAGATCTGA AATTTCACTT TGGCCTGCTG GGCGGCCCAC TACTGCTCCT CATTGTCATC
TGGCTGACAT TTTTCAATTC GAGTTTTGAT AGTGCGTTAC TATTGAAGCT GCTTTTGGTC
TCAAGCATCT ACACTCTGGG CTACAGCTTA AGCTACTACC TGCATCAGGG ACGGCTAAAT
CGTCTATGGC AACATCTGCA ACAGATAGTC CATATCAACG ACACCACCTT CGAACTCGTC
AACCTGGCCA GTCATTACAA AAATGAACAG GCATTTTTGG ATGCACTCCT GAAAAAAGCC
GTTAGCAGTA TTGAAGGGGC TGAGATGGGA AGTATCATTC GAGTCGACCC CGATAGCCAG
CAACTCCACT TCGAATCGGC CGTTGGCATC AATATCGAAA AATTACGACA TGTTAAATTT
CACCTGGAGC AGTCTTTCGA GTTCCGCTTG ACCGAGGGAC GCTGCGATAG AGTCGTGGTG
ATTGATAACA TGGAGAATAT TAACTCCCAT AGTACATTAA CCGATGCGGA ACAGGAGATC
CTACTGACCG CCCCCGACAA CCCTATCCGC TCTACTCTTT CAAGCCCAAT CCAGATCGAC
GGCAAACTGT ATGCGATGAT CAACTTAGAC AGTAGCGTAA CTAAGGCTTT CGGACACTAT
GACCGCAACC TTGTCAGCAT CTTGACCCAC GAAGCCGAAA ACGCTATCGC CTTGTATCAA
AAAACACGTC AAATCCAGAT GTTAGCTAAC TACGATAGCC TCACCTCCCT CTACAACCGT
CAACGCTTCG AAGCGCGACT CGAGAATTGG AGCATTAAGC CTCACTTTGG TAGCTTCCTG
GTATTGATAG ATCTAGATAA CTTAAAACAG ATCAACGACT GTGGCGGCCA TCAAGCCGGC
GATAATGCCT TACGTTCACT GGCATTGGTA CTGAAACGCT ATTGGCACGA ACATCAACTC
GTCGCACGTT ATGGTGGCGA TGAGTTTATT GCCCTATGCC ACGGGCCGTT AGATAAGATT
ATGGCTGACT TAGCCGAAAT TCAGCGGGAG CTGAATAGCG AAACGACAAA GGTTCACTTC
AGTTTCGGAA TCGCAGAATA TCGAAACAAC TGGCAGCAGG CCTTTAGAAC AGCAGATATC
GGCATGTATG ATCATAAACG CAGTAAAAAA TGCGCTTAA
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| Protein sequence | MDRITKVTET DGLKKQQIDS LDLKFHFGLL GGPLLLLIVI WLTFFNSSFD SALLLKLLLV
SSIYTLGYSL SYYLHQGRLN RLWQHLQQIV HINDTTFELV NLASHYKNEQ AFLDALLKKA
VSSIEGAEMG SIIRVDPDSQ QLHFESAVGI NIEKLRHVKF HLEQSFEFRL TEGRCDRVVV
IDNMENINSH STLTDAEQEI LLTAPDNPIR STLSSPIQID GKLYAMINLD SSVTKAFGHY
DRNLVSILTH EAENAIALYQ KTRQIQMLAN YDSLTSLYNR QRFEARLENW SIKPHFGSFL
VLIDLDNLKQ INDCGGHQAG DNALRSLALV LKRYWHEHQL VARYGGDEFI ALCHGPLDKI
MADLAEIQRE LNSETTKVHF SFGIAEYRNN WQQAFRTADI GMYDHKRSKK CA
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