| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1316 |
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| Symbol | |
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| ID | 5613883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1562334 |
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| End bp | 1563545 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 640932169 |
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| Product | major facilitator superfamily permease |
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| Protein accession | YP_001473055 |
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| Protein GI | 157374455 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000323105 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTATCAA TTCGAAAAAC ATTAGTGCAG AGTAATATCC AAAATGTTTT TTTAGCTATA
TTATTAGCTT CAATTACAGC CCTCGCGCCT TTAGGTATTG ACACCTATTT ACCTGCATTA
CCTTTGATGG CAATTGACTT TGGTAGCAGC GTACAAATCA TACAAACATC AATTTCCATC
TTCTTCATCG GTTTGGCACT AGGACAATTT TTAGGGGGAG CACTATCTGA TAATTTTGGT
AGAAAACCCA TATTAATCAT TGGTCTTTTT GGGTTCATGT GCACCAGTAC CGCTTTAGTA
TGGGTTGATC AAGTTGTTTA TTTACTAGCT TTACGATTCT TGCAGGCAAT GTCAGGAGGT
TTAGCCATGG TTAATTCATC AGCGATCGTT AATGACCGAT ATGTAGGTTT AGAGCGCACT
CGTATGTTTG CCTTAACTAG TCTTATTATG GCGAGTGCTC CCCTTATTGC ACCAGCAATT
GGATCCATTT TGCTTCATTT TTTTCAGTGG CAAGCTATTT TTATATTTCT TTCTATATAT
GCGGCTATTA TTCTTGTTGC CACTCTTATC AGCCTAAAAG ACTATTCAAC ACCAACAAAA
ACAACAGGCC TTAAGGAATT ATTTACCCCC TACAAAGTTG TTTTGACTAA TATCAGAGCA
TGGCGGTATT TACTGCTAAG TTCAAGTGCA ACTTCTGTTA TGTTTATTTT CCTTACCAAT
GCAGCATTTG CTTACATGGA GTTCTTCCAT GTAAGCAAGG AGCTATTTCC AGTTCTATTT
GCTAGTAATT TGTTGGCGAT GATGATTTTA AATCGTGCTT CGTCCTTCCT TTTACGTTGG
CTATCTCCCT TACAACTTTT ATTGACTGGG AGTATGCTTC AGTTTATAGC GGTTAGCCTA
TTTGTCATCG GTAATGCAAC TGGTTTGTCT TTAGAAATGA TGGTCTCGTT AATGATACTG
GCAATCGGTT CTTTAGGGCT GATTTCGCCT AATGCTATGA GTCTTTATAT GCAATCATTT
TCAAGCGCCG CTGGTTCTGC ATCAGCCATG ATGGGTATTT TCAACTTTGG ATGTGGAGCG
TTAATGGGGG CTTTATCAAG TTTGTTGATC CATGAAGATT TACTTCCCAT GTCACTTTTA
ATGTGGCTAA TGGCTGTTAT TACTGTGTAT TTATCTTACT TAGCAAATAA TATGCAAGAT
GCATCGCATT AA
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| Protein sequence | MLSIRKTLVQ SNIQNVFLAI LLASITALAP LGIDTYLPAL PLMAIDFGSS VQIIQTSISI
FFIGLALGQF LGGALSDNFG RKPILIIGLF GFMCTSTALV WVDQVVYLLA LRFLQAMSGG
LAMVNSSAIV NDRYVGLERT RMFALTSLIM ASAPLIAPAI GSILLHFFQW QAIFIFLSIY
AAIILVATLI SLKDYSTPTK TTGLKELFTP YKVVLTNIRA WRYLLLSSSA TSVMFIFLTN
AAFAYMEFFH VSKELFPVLF ASNLLAMMIL NRASSFLLRW LSPLQLLLTG SMLQFIAVSL
FVIGNATGLS LEMMVSLMIL AIGSLGLISP NAMSLYMQSF SSAAGSASAM MGIFNFGCGA
LMGALSSLLI HEDLLPMSLL MWLMAVITVY LSYLANNMQD ASH
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