| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1312 |
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| Symbol | |
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| ID | 5611301 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1557110 |
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| End bp | 1557952 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640932165 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001473051 |
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| Protein GI | 157374451 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000449506 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATCCAT CTATGCTGCG CACATTTGTC GCTGTTTATG AAGAAGGAAA ACTCACCTTA
GCAGCTCAAC GCTGTGGTGT AACACAACCA ACGATAACTA ATGTTATCAA AATGCTTGAA
CAAGATTTAG GTGAAAGTCT ATTTAAACGA GGTGGTCAAG GAGTTGTTCC AACTGGTGTA
GCTCACAGTC TTTATTTTAA AGCTAAAAAT ATTCTTAGTG AACTAGATTT GATTCTCAAT
ACTGGATGGG ATTCTGTAGA GACAGTGAAA GTAGGTATAC CTCCTATCAT GAGTCCCCAT
AAGCATCAAA AAATATTACG GACTTTAAAC CGCTTATCAA ATATAGGAGT GCGAATCCAC
ATTTGCCACA AGCGACAGCC GTCAGATATA AAAATAGGCA TGGATGATAA GCGCACAGAG
AACGAGCTTT TTATACCTTT ATGGAATGAA AAATTTAAGT TGTGCATTCC ATTTGAACAT
CCTTTAAATC AGCTTGCTGA AATTACTCCG TCTGATCTTG ACGGAGTTGA GTTTGTAGTA
AACCCAAGGT GTTTTAACCG TAAACGTATT GCCAGAGTGA CTTCAGGAAA TAAGCGAGCA
ATTAAAGTCA CTGCACACGC ACATTCTAAA CCCATGCTGA TTCAATTGGT CCGAGCTGGT
TATGGGGCTG CATTAATGTC TGATGCAATG CTTGAAGGCG TGCAAGATGT AGCAATCCGA
GAATTGAGTG GTAGTGAAAT GTTAATTCGC TATGGCATAT TGGTAGTTGC AGACAAAGCC
GAAGAATTAC CATATTCTCA AATCATTAAT GCCATTAAAA CAATTGATTT TAGTGCTTTG
TAG
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| Protein sequence | MNPSMLRTFV AVYEEGKLTL AAQRCGVTQP TITNVIKMLE QDLGESLFKR GGQGVVPTGV
AHSLYFKAKN ILSELDLILN TGWDSVETVK VGIPPIMSPH KHQKILRTLN RLSNIGVRIH
ICHKRQPSDI KIGMDDKRTE NELFIPLWNE KFKLCIPFEH PLNQLAEITP SDLDGVEFVV
NPRCFNRKRI ARVTSGNKRA IKVTAHAHSK PMLIQLVRAG YGAALMSDAM LEGVQDVAIR
ELSGSEMLIR YGILVVADKA EELPYSQIIN AIKTIDFSAL
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