| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1311 |
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| Symbol | |
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| ID | 5611342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1556294 |
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| End bp | 1557100 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 640932164 |
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| Product | transcriptional regulator-like protein |
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| Protein accession | YP_001473050 |
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| Protein GI | 157374450 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000442274 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGAATACTA AATTCTTGAA AATATTTGCA TCTCTTTATG AAACACAAAA CTTTACTCAA
ACATCAAAAA ATTGTTTTAT AACTCAACCA GCGGTTTCAA ACAGCATAAA AACATTAGAG
AAAGAACTTG GAGTTCAATT ATTTAAACGC GATAGCGGCC ATGTTGAAAC AACACGCGAA
GCAGAAAACT TGTACCCTAA AGTGATACGA TTACTAAGTC AATTTGAGTC ACTAAACCAA
ATTGGCACTG ACGCTAAAGA AAATCAGATA ACTATTGGAT TGCAAACCGA TTTATGTGCT
GAAAAAGTAG ATTTGATTTT GTCCTCAATA CGCAAAACAT TCCCAACAAC CTTGCTACAC
CTTGTTCGAC CTGGTGAAAA TTGTGATTTC TACATTGCAG CCGATTTTAA TATCAGAGAA
GGGGATAAAT TGTTGCCTTT ATGGCGAGAG CAATATCAAT TGTTCGTACA TCCAGAGTTA
ATGTCGCGTG GTGAGCATAT TCCTATAATA AGCGATGAGT GTGACAAATT GTCAAGACAA
CATGGTGGTG ATATTCGATT TACCTCGCCT AAGAATGTTG AGTTTGTTGT AGATCGTCAT
CGAGACGTAG ATATTCAAGT TCGTGAATTC GTTAAAGCAG GTTACGGCGC AGCTCGATTC
GCCAGCTCAT GGGTGACGAA TGAAGTATTA AGGCCGATAC CTAACACTCA GAGTCAATGG
GTTGATATAG GGATAGTATA CTCTGAACTC TCTCAACGAA AACAAATTAT TAACGCAATA
AATACTATTG CAAATATTCA TTTTTGA
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| Protein sequence | MNTKFLKIFA SLYETQNFTQ TSKNCFITQP AVSNSIKTLE KELGVQLFKR DSGHVETTRE
AENLYPKVIR LLSQFESLNQ IGTDAKENQI TIGLQTDLCA EKVDLILSSI RKTFPTTLLH
LVRPGENCDF YIAADFNIRE GDKLLPLWRE QYQLFVHPEL MSRGEHIPII SDECDKLSRQ
HGGDIRFTSP KNVEFVVDRH RDVDIQVREF VKAGYGAARF ASSWVTNEVL RPIPNTQSQW
VDIGIVYSEL SQRKQIINAI NTIANIHF
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