| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1305 |
|---|
| Symbol | |
|---|
| ID | 5611313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1548674 |
|---|
| End bp | 1549606 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640932158 |
|---|
| Product | cytochrome c family protein |
|---|
| Protein accession | YP_001473044 |
|---|
| Protein GI | 157374444 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01905] doubled CXXCH domain
[TIGR03508] decaheme c-type cytochrome, DmsE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000952698 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGACGTC TTTTATTTAA ACTACTTTTA ACCGCTGTAT TCAGTACTGG ATGTTGGTCC
AATGTTGCCT TAAGCAATAC TACGGAGCAG CAATTATTAG ACAAATTTGA AGTCGGTAAA
TATTCAAACA AGGGGGCGGA CACTTGCCTG ATGTGCCACA AGAATAATTC CAAAGTGATG
GCGTTATTTG ATGGTGTGCA TGGTGAAATG GGCAACAGCG AGAGCCCTAT GGCGCAGCTG
CAATGCGAGT CTTGCCATGG ACCTCAAGGA AAGCACAGAG GCAAAAATGA GCCGATGATA
ACCTTTGGTG CCAACAGCAA TGTGACCAAT GAACTGCAAG ATAGTGTGTG TTTATCTTGT
CATCAAGACA GCAAACGCAT GGGATGGCAC GACGCATTAC ACGCTGAGGA GCAATCCTGT
GCCAGTTGCC ATGATATTCA TACGGGCCAG GACAAAATAA TGAACCCGGC ATTTGAGGTA
TCTATTTGTA CCGAATGTCA TACCGAGCAA AAGCTCGATA TCAATAAGCG CAGCAGTCAT
CCTTTGGCCA CCGGCACCAA AGTAGGTTCA ATGACCTGCT CTAGTTGTCA CAGTAGCCAT
GGTTCAATGA CCGATGCTAG CCTCAAACAA GTCAGTATCA ATGAAACCTG CTATGAGTGT
CATGCTGAAA AGCGCGGTCC CTTTTTATGG GAGCATGAAC CTGTTGTTGA AGATTGTACA
ACATGTCACA ACCCTCACGG CAGTGTTAAC GAACCCCTGC TAAATTCTCG TGCTCCCCTT
TTATGCCAAG ACTGTCATGC CAGTGATGGT CACGCCAGTC GTGCCTATGG TGACGACAAT
TCCGCCTTTA GTGGTGGTGG TCAAAGTTGT CTGAACTGTC ACGGCTCTAT TCATGGTTCC
AACCATCCAT TGGGCAACGC GTTTCAGCGA TAA
|
|---|
| Protein sequence | MRRLLFKLLL TAVFSTGCWS NVALSNTTEQ QLLDKFEVGK YSNKGADTCL MCHKNNSKVM
ALFDGVHGEM GNSESPMAQL QCESCHGPQG KHRGKNEPMI TFGANSNVTN ELQDSVCLSC
HQDSKRMGWH DALHAEEQSC ASCHDIHTGQ DKIMNPAFEV SICTECHTEQ KLDINKRSSH
PLATGTKVGS MTCSSCHSSH GSMTDASLKQ VSINETCYEC HAEKRGPFLW EHEPVVEDCT
TCHNPHGSVN EPLLNSRAPL LCQDCHASDG HASRAYGDDN SAFSGGGQSC LNCHGSIHGS
NHPLGNAFQR
|
|---|
| |