Gene Ssed_1290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1290 
Symboleno 
ID5611175 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1533416 
End bp1534711 
Gene Length1296 bp 
Protein Length431 aa 
Translation table11 
GC content44% 
IMG OID640932143 
Productphosphopyruvate hydratase 
Protein accessionYP_001473029 
Protein GI157374429 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0148] Enolase 
TIGRFAM ID[TIGR01060] phosphopyruvate hydratase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000272056 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCTAAAA TCATTAATGT CATTGGTCGT GAGATCATGG ATTCACGTGG CAACCCAACA 
GTAGAAGCTG AAGTTCATCT TGAAGGTGGA TTTAACGGTA TGGCTGCAGC GCCATCTGGC
GCTTCTACCG GTAGTCGTGA AGCATTAGAA TTACGTGATG GCGATAAAAC TCGCTACATG
GGCAAAGGTG TATTAAAAGC TGTTGCTAAC ATCAATGGTC CTATCCGTGA TGCTTTAATG
GGCAAAGATG CAACTAATCA AGCTGAACTC GATCAGATCA TGATTGACCT TGATGGTACT
GAGAACAAAG ACAAGCTAGG CGCTAATGCT ATTTTGGCTG TCTCGCTTTC AGCGGCTAAA
GCTGCAGCGT CATTTAAAGG CTTGCCTTTA TATGCACATA TCGCTGAGCT AAATGGTACT
GCTGGTCAGT ACTCTATGCC TGTACCTATG ATGAACATCT TAAACGGTGG TGAGCACGCT
GATAACAACG TGGATATCCA AGAGTTTATG GTTCAGCCTG TTGGCGCTAA AACGTTCCGT
GAAGCACTAC AGGTAGGTGC CGAGATCTTC CATAACTTGA AGAAAGTACT TCAAGAGAAA
GGTCTGAGTA CTTCTGTTGG TGACGAAGGT GGTTTCGCTC CTAACTTAGC TTCGAATGCC
GATGCATTAG CAATGATTAA AGTTGCTGTT GAGAAAGCTG GCTACAAGTT AGGTGAAGAT
GTCACTCTTG CTCTGGACTG TGCCGCTTCT GAGTTTTACA AAGATGGCCA GTATGACCTT
ACCGGTGAAG GTAAAGTTTT CAGCGCTAAC GGTTTCTCAG ACTTCCTTAA GTCATTGACT
GAGCAGTACC CAATTGCTTC TATCGAAGAT GGCCTTGACG AGTCAGATTG GGATGGTTGG
GCATACCAGA CTCAAATCAT GGGTGACAAG ATCCAGCTTG TAGGTGACGA TCTGTTTGTT
ACTAACACTA AGATCTTAAA GCGTGGTATC GATAACAACA TCGCTAACTC AATCTTGATC
AAGTTCAACC AAATTGGTTC TCTGACTGAG ACTTTAGCGG CTATCCGTAT GGCTAAAGAT
GCCGGTTATA CCGTTGTTAT CTCTCATCGT AGTGGTGAAA CTGAAGATTC AACGATTGCC
GATCTTGCTG TTGCAACATC TGCTGGTCAA ATTAAGACTG GTTCTCTATG TCGTAGTGAC
CGTGTTGCTA AGTACAACCA ATTGCTTCGT ATCGAAGAGC AGTTAGGTGA AAAAGCACCA
TACCGTGGTC GCAGCGAAAT TAAAGGTAAA GCATAA
 
Protein sequence
MSKIINVIGR EIMDSRGNPT VEAEVHLEGG FNGMAAAPSG ASTGSREALE LRDGDKTRYM 
GKGVLKAVAN INGPIRDALM GKDATNQAEL DQIMIDLDGT ENKDKLGANA ILAVSLSAAK
AAASFKGLPL YAHIAELNGT AGQYSMPVPM MNILNGGEHA DNNVDIQEFM VQPVGAKTFR
EALQVGAEIF HNLKKVLQEK GLSTSVGDEG GFAPNLASNA DALAMIKVAV EKAGYKLGED
VTLALDCAAS EFYKDGQYDL TGEGKVFSAN GFSDFLKSLT EQYPIASIED GLDESDWDGW
AYQTQIMGDK IQLVGDDLFV TNTKILKRGI DNNIANSILI KFNQIGSLTE TLAAIRMAKD
AGYTVVISHR SGETEDSTIA DLAVATSAGQ IKTGSLCRSD RVAKYNQLLR IEEQLGEKAP
YRGRSEIKGK A