| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1269 |
|---|
| Symbol | |
|---|
| ID | 5614042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1507120 |
|---|
| End bp | 1508217 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640932122 |
|---|
| Product | metallophosphoesterase |
|---|
| Protein accession | YP_001473008 |
|---|
| Protein GI | 157374408 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000013394 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAAAAAGT TCATCGCCTT ACCTTCACTC GCCTTGCTGG CTTTCACTCA ATTAACCATA
GCCTCTACAA CTGCTACCAC ACCGGCCATA GAAACTTTAC CTGTGACCGA TGGCCCCTAT
CTGTTTGAGC AAACAGATAG GGGCGCGCCC AGAACCGCTT ACTGGATCTG CTCAGACAAG
CTACGCACCA CCCAAGTTCA AGGTTTACGG CTCGTGAGTC CCGATAACTG TGGGGCGCTA
CCGCAGCCTA CACTGAACCC GAAGGCCTTT GATGTCTCTA CCAATACCTA CTCCGATATC
AAAAAAGTCG TGGCACTCAG TGATGTCCAT GGGCAATACG ATATATTGAT CACCCTGCTG
AGAAACCAGA ACATTATCGA TAAAGACAAC AATTGGGCCT TCGGAGATGG CCATATGGTG
ATGACGGGAG ATATGTTTGA CCGAGGCCAT CAAGTCAATG AAGTACTCTG GTTTATGTAT
CAGTTAGACC AACAGGCCAT CGAGGCAGGC GGAAAGCTTC ACCTCTTGAT GGGGAACCAT
GAGCAGATGG TGATGCGCGG CGATCTTCGT TACGTACATG AACGTTACCA AGTGGCTGCT
AAGCTGCTTG AGAGAAGTTA CGATGAGCTT TACGACAAGA GCAGTGAGAT AGGCCAATGG
CTGCGCGCGA AACATACACT GGTCAAAATC AACGACACCC TGTTCTTACA CGGCGGGATC
AGTGGCGAGT GGCTCGACAG AGGACTGACA TTAGATGTCG CCAACGACCT TTACCGCAAA
AATATCGATA GATCTAAGCC TGAGCTGAAG CAGGACGATC TGCTCAACTT TCTCTTCTTC
GGTAACGGGC CGACCTGGTA CAGGGGCTAC TTCAAGCCGG GTTATGATGA GGCAGAGCTG
GACAAGATAC TGAGCTACTT CGATGTCAAA CATATCGTCG TCGGTCACAC CTCACAAGAG
CGTGTACTGG GGCTGTATAA CAACAAAGTC ATAGCGGTCG ACAGCAGTAT CAAAGAGGGG
CTTTCCGGTG AGCTATTGCT GATGGAGGAC AATACCTTGA CCCGTGGCCT GTATAACGGG
AGTCGCATCG CGTTATAA
|
|---|
| Protein sequence | MKKFIALPSL ALLAFTQLTI ASTTATTPAI ETLPVTDGPY LFEQTDRGAP RTAYWICSDK
LRTTQVQGLR LVSPDNCGAL PQPTLNPKAF DVSTNTYSDI KKVVALSDVH GQYDILITLL
RNQNIIDKDN NWAFGDGHMV MTGDMFDRGH QVNEVLWFMY QLDQQAIEAG GKLHLLMGNH
EQMVMRGDLR YVHERYQVAA KLLERSYDEL YDKSSEIGQW LRAKHTLVKI NDTLFLHGGI
SGEWLDRGLT LDVANDLYRK NIDRSKPELK QDDLLNFLFF GNGPTWYRGY FKPGYDEAEL
DKILSYFDVK HIVVGHTSQE RVLGLYNNKV IAVDSSIKEG LSGELLLMED NTLTRGLYNG
SRIAL
|
|---|
| |