| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1262 |
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| Symbol | |
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| ID | 5614230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1497399 |
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| End bp | 1499039 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932115 |
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| Product | sulfotransferase |
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| Protein accession | YP_001473001 |
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| Protein GI | 157374401 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0215668 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTGCA ATTTAGGGAT TAGAATAGGC CATGAAGATA ATAATAAGAA AAAGGAAATG
GAATTGAACA GAGAAGAGCG CTACCTCAGT GATGCAAAAG CCTTTTATTC TGAGAAGAAA
TTCTCATCGG CCGGTATGTA CGCAAGAAAG GTGCTTCGCC GTAACCCGGA GCAATGTGAT
GCATTGATTA TTCTGGCCCG CCTTGCGCTA AAAAATAACG ATCTTAAAGA AGCGCTCAGA
ATATTCTCCC TTATCAAAAC GCTCGCTCCG AACTCTTTTG AGGCCATTTC GGGACTAGTC
TTTATCGCCG AGAAGCGAGA AGACTTTTTT GCTGCATATC GATATCTGGT CACTCTCGTC
GAACTTATGC CTGAAAATCA CGAAAATTGG TTTAAGCTTG GTATCATGGC TAGCAAGATA
GGTTTAATGG ATGAGGCTGA AGAAGCATTC AATTTCTGTC ATAACAAGAG ATCAGTTGAG
CCTTCGGTAT TACTTAACTT AGGTCATGTT TACAAAGCTA AAGGCGATAC CGCAAAAGCC
GCAGAGTTTT ACCACAACTA CATAAAGGCG GGTCCTGACC ATCAGGCTGT AGGTTATTGG
AGCCTTGCCG ATCTTAAAAA TTATTCATTT ACCGATACTG ACGCAAAGTC ACTAAAAACT
AACCTGGAAT CAAGCCAATA TTCGAATGCC AGTCGTTCAC TCTTTCTGTT TGCTCAGAGT
CGTATTTTCG AGCAAAAGCA TGATTATGAG CAGTCATTCA ATTCAGTAAG TGAAGCTAAC
CGACTGATGC AGGGGTTACG TCCATTTAAA GCCGCTCCTT TTAGTCACAT CATCGATTCT
CTGCTCGAAT GCACTCCAGT TAAAAAAGAT AAGAGTCAGT CGTGCGCTAC TCAACAAACG
CCAATATTTA TTGTTGGCAT GCCGAGATCG GGTACTACGC TTACCGAACA GATTTTAGCT
AGCCACTCGC TGGTCGAGGC TACCGATGAG CTGCCTTACA TGGAACGCTT GGCTTTAGAG
TTAGACATGT CTGGCGGGTA TGCTAAATGG CTGGCAAGGT TAACTGATGA GAAGCTTGAT
AGTTTAAGGC GGCAGTATTT AAGTCAAGTC TCACAATACT TTGAAAGTAC CCCTGAGTAT
TTTATCGATA AAAATCCAAA TAATTTTTTG CATATCGGCT TAATTAAAAC TCTGTTTCCC
GATGCCAAGA TCGTCAATGT CATTCGGGAT GCTAATGATA ATGCCATGGG GGTGTTTAAG
CAGCACTTTA GTCGTGGACA CGACTACTCT TACTCACTCG ATAATATTGT CGTGTATTGG
AAGCGCTATG TGGATTTGAT GAGACATTGG ACTGACTTGT ATGGCGAGGA TATTTATCAT
CTCAGCTTTG AAAAGTTAGT TCATTCTCCC GATGACGAGA TAGCTAAGCT ACTCAATTAC
TGTGGGTTAT CGTTTGAGGA TCAATGTTTA ACTTTTTATA AATCAAAAAG AACGGTGTTA
ACCCCAAGTG CGAGCCAAGT CAGGCAGCCT ATGAATACTA AAGCGATTGG ACAGAGCCAA
AAGTATCAGG CTTATATGCC GAGCAGTTAT CAGCAACTTG CGGGGATTGC TGAAAAGGTA
AAATCTGAAT TTTTATCCTA A
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| Protein sequence | MDCNLGIRIG HEDNNKKKEM ELNREERYLS DAKAFYSEKK FSSAGMYARK VLRRNPEQCD
ALIILARLAL KNNDLKEALR IFSLIKTLAP NSFEAISGLV FIAEKREDFF AAYRYLVTLV
ELMPENHENW FKLGIMASKI GLMDEAEEAF NFCHNKRSVE PSVLLNLGHV YKAKGDTAKA
AEFYHNYIKA GPDHQAVGYW SLADLKNYSF TDTDAKSLKT NLESSQYSNA SRSLFLFAQS
RIFEQKHDYE QSFNSVSEAN RLMQGLRPFK AAPFSHIIDS LLECTPVKKD KSQSCATQQT
PIFIVGMPRS GTTLTEQILA SHSLVEATDE LPYMERLALE LDMSGGYAKW LARLTDEKLD
SLRRQYLSQV SQYFESTPEY FIDKNPNNFL HIGLIKTLFP DAKIVNVIRD ANDNAMGVFK
QHFSRGHDYS YSLDNIVVYW KRYVDLMRHW TDLYGEDIYH LSFEKLVHSP DDEIAKLLNY
CGLSFEDQCL TFYKSKRTVL TPSASQVRQP MNTKAIGQSQ KYQAYMPSSY QQLAGIAEKV
KSEFLS
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