| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1259 |
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| Symbol | |
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| ID | 5613900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1494644 |
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| End bp | 1495804 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932112 |
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| Product | porin |
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| Protein accession | YP_001472998 |
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| Protein GI | 157374398 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.042009 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAACC ATTTAATCGC AAATTTAATC ATTATAATAA TTTGTGTAGG AGCTTTTAGT
ACAAGAGCTG TTGGGGCCGA TACAACACTC GAATCATTGA AGCTGCAAAT AGAGCGACTC
CAAAAACAGG TCGAACAGTT AGAGAAAGCT CAACTCCAAG CGCAACAACA AGACCAAGTC
ATGGCTGTCC CGGCTATCGA GTCTGTGCCG GATAAGCTAA CCAGTGACGT CCCCAAGAAA
ACCAACAATA CAGTTAGTGC TTACGCGACC ATGAGACCGA CCTTTGGTTA CCTCGATGAG
GATGGTGACA CGTTTTATGA TGTTCGCGAT GCACTGTCTC GTGCGGGGAT CAGAGCAACC
AATGAGTTTA TGCCTGGATG GACAGCCGAA TTACATGGCG AATGGAGCAT AGACATGGCA
AATAGTGGTG ATTTTGGTAA AGCCAGAAAG GCATACGGTG CTGTAGCCAG CCCCTATGGC
AGAGTGGGTA TAGGTAAAGA TAGACCCCCG CAATACCAGC TGATCGCCGA ATATGTGGAT
ATCTTCAATC ATGCCAATAG TCCGTTTGCC TATGATGCCG AGAGCGTCTT CTTCGTCGAT
AATATGCTTA CCTACCGTTT ACAAACCGGT AAGTTTAGCT GGCTTGCGGC TGGACAATTT
GATGGAGGGA GTGGTAGCGA TGATGCCGAT CTGGTTAATC TTGGGGTAGG TTTCGATCAT
GGTGAGTTTC ATGGGGCTAT CAGCTACCTG GTTGAGGATA GTCTGGATTC TGAGTTGATC
ACCGGTGAGG ATGAAGTGTG GGCAGCTTCT CTTGCCCATG GTTTTTCTAA TGGCCTGTAT
TTAGCCGCAG CTTATCAGGA GCGAACTTAC AAAAGGGATC AAATATCTCA AGACCGTGAT
GGCCATACCA TTGACTTGGC GGCGGCTTAT CCATTGGGTG AGCAGTTTAA GGTTAAGTTA
GGATACTTCG AATTTGATGA TGGCTATGGG CAATTGATTA GTCGGAAGTT CGATGGCTAC
AACACCACGC TGGAATGGTT GCCGGACGAA AATTTACGCT TCCATATCGA GTATCTGTAT
CGTGATATGG ACTACTTCGA TGACTTCTCA TCTTGGGTGG TTGGCTTCAG GTATGACTTT
TCTAAAGAGT GGCGTTTTTA A
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| Protein sequence | MRNHLIANLI IIIICVGAFS TRAVGADTTL ESLKLQIERL QKQVEQLEKA QLQAQQQDQV
MAVPAIESVP DKLTSDVPKK TNNTVSAYAT MRPTFGYLDE DGDTFYDVRD ALSRAGIRAT
NEFMPGWTAE LHGEWSIDMA NSGDFGKARK AYGAVASPYG RVGIGKDRPP QYQLIAEYVD
IFNHANSPFA YDAESVFFVD NMLTYRLQTG KFSWLAAGQF DGGSGSDDAD LVNLGVGFDH
GEFHGAISYL VEDSLDSELI TGEDEVWAAS LAHGFSNGLY LAAAYQERTY KRDQISQDRD
GHTIDLAAAY PLGEQFKVKL GYFEFDDGYG QLISRKFDGY NTTLEWLPDE NLRFHIEYLY
RDMDYFDDFS SWVVGFRYDF SKEWRF
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