| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1255 |
|---|
| Symbol | |
|---|
| ID | 5614102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1487281 |
|---|
| End bp | 1488456 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640932108 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001472994 |
|---|
| Protein GI | 157374394 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.518513 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCTC AAACCGTTTC AAAATTTAAA TGGGGTATTC TCTTCATCGC AGGTTTACAG
CTTACGGCAT GCGGTGAGGC CCCGGCACCT CGGCAAGCCA TGTTGCCAAG TGTGATCGTC
AATACCGCTA AAACGGAAGA GATCCAGTCA AAGACGGAGA TTGTTGGACG CACAAATGCC
TCAGAAGATG TCACCATAAA ATCTCAAATT CAGGGGCAGT TACTTAAAAG AACGTTCGTC
GAGGGTGACG ATGTGGAAGC GGGGGATCTC CTGTTCGAGA TCGATCCCGC TACTTACGTC
GCTGAGTTAG CTCAACAAAA AGCGGTGTTA AAGCAGGCAT TCGCGTCGCG TGATGTCGCC
GTCATGAACT GGGAGCGTGG TAGGCGCTTG CTTCCCGACG GCATGATCAG CGCGCAGGAT
ATGGATGAGC TCACCACGCG TAAACTCACG ACAGCGGCTG GTGTTGTTCA GGCTGAAGCT
GCGGTGCAAG GTGCTGAGCT GCAGTTAAGC TATACCAAGG TATATGCACC TATTTCCGGG
CGTATCAGTA ATGCTATGGT CAGTACCGGT GACATCATCA CCCCTAACTC GGACATGGCT
AACCTGGTTC AACTGCAACC TATGTGGGTT AATTTTCAGG TTGCTGAAAG AGCCTTGATT
AACGCTAAGC AAAACTTTTC TAAGGCGGCC GATAGAGAGA TACAGATTTC GGATATCGTT
ATCAGCCTGC GACTGCCAAA TGGCTCTATG TTCAACGAAA CGGGTTTTAT CGATTTTGTC
AGTAACAGAG TCGATGCGGC GACGGGCACT TTACCCATTC GAGCCACATT CAAGAATGGT
GAGAAAATGA TGTTGCCGGG AATGTTTGTC ACGCTCGTGA TTGAATCTCC GGTTAAAGAG
AACGCATTGC TGATCCCACA AGCGGCGGTA CAGGAAGATC AACAGGGTCG ATTCGTGATG
GTACTAAATG ATCAAGATAT GGTCGAGAAA CGCATCGTTG AACTCGGCGA ACGCTTCGGT
ATCGATTGGC GTGTGATAAG CGGATTGAAT GATGGAGAGC GTATCGTCGT AGACGGTCTG
CAGAAAATTC GCCCGGGTAT TCAGGTGAAA GCGGTTGAGC AAGAAGTTGT GCCTTTTCAA
GACACTAAAT CTTCCCCGAA CAATAACGCA TCATAG
|
|---|
| Protein sequence | MAAQTVSKFK WGILFIAGLQ LTACGEAPAP RQAMLPSVIV NTAKTEEIQS KTEIVGRTNA
SEDVTIKSQI QGQLLKRTFV EGDDVEAGDL LFEIDPATYV AELAQQKAVL KQAFASRDVA
VMNWERGRRL LPDGMISAQD MDELTTRKLT TAAGVVQAEA AVQGAELQLS YTKVYAPISG
RISNAMVSTG DIITPNSDMA NLVQLQPMWV NFQVAERALI NAKQNFSKAA DREIQISDIV
ISLRLPNGSM FNETGFIDFV SNRVDAATGT LPIRATFKNG EKMMLPGMFV TLVIESPVKE
NALLIPQAAV QEDQQGRFVM VLNDQDMVEK RIVELGERFG IDWRVISGLN DGERIVVDGL
QKIRPGIQVK AVEQEVVPFQ DTKSSPNNNA S
|
|---|
| |