Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1240 |
Symbol | |
ID | 5611509 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1472427 |
End bp | 1472987 |
Gene Length | 561 bp |
Protein Length | 186 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640932093 |
Product | hypothetical protein |
Protein accession | YP_001472979 |
Protein GI | 157374379 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.185429 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAG TTATAGTTGT TTTGGCTGCA ATGGCGATGA GCGCCTGTAG TTCTATGAAA ACAAGTTCAG ATTATGATCC TGCGGCTAAT TTTAGTGACG TGAAAACCTA TGCCTGGGTT GAACAGAAAA GCCAAGACAC CAGTTACCAT TTAGACGGAT TGATGGATCA ACGTGTCCGA GCTGCCGTCG ATAGTCAGCT TTCACTCAAA GGGGTAACAC TCAGTGATCC CCAAACTGCA GATATTCTGG TGAATTACCT CACCAAGGTA GATAAGAAGA TTAACGTAGA TACCTTCAAC ACAAACTTTG GATATAACCC CTATTATGGT TCTCGATGGG GCATGAGCGG CTCTATGCAT ACCCAAACCA CGGTTCGAGA GTATGAGGTT GGAACCTTGA TTTTAGATAT GGTTGATAGA GAAACCGGAA AGTTGATCTG GCGTGGCTCG GTAGCCGACA CCATTCGTGA TAAGAATACG CCAGAAGAGA GAGTAGAGGT TGTTAACAAG GCTATTTCTG AAATGCTGTT GAATTATCCC CCTAAGCCAG AAGCGAAATA G
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Protein sequence | MKKVIVVLAA MAMSACSSMK TSSDYDPAAN FSDVKTYAWV EQKSQDTSYH LDGLMDQRVR AAVDSQLSLK GVTLSDPQTA DILVNYLTKV DKKINVDTFN TNFGYNPYYG SRWGMSGSMH TQTTVREYEV GTLILDMVDR ETGKLIWRGS VADTIRDKNT PEERVEVVNK AISEMLLNYP PKPEAK
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