| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1199 |
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| Symbol | |
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| ID | 5612628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1426524 |
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| End bp | 1427510 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640932048 |
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| Product | prepilin-type cleavage/methylation-like protein |
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| Protein accession | YP_001472938 |
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| Protein GI | 157374338 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0624934 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAT TAGCAATTAG TATGACAAAG TTTCAAAAAG GGATGTCACT CGTAGAGTTA
ATGGTGGCGC TAGTGATTGG CCTTTTTTTG TCTGCGGGTG TCTTTACTAT GTTTAGTATG
TCTTCATCTA ATGTGACGAC AACAGGCCAA TTTAATCAGA TTCAGGAAAA TGGCCGCATT
GCACTTGCGA TTATGGAGCG CGATATAAGT CAGCTGGGTT TCATGGGAGA TATTACGGGA
ACAGATTTTG TCGTGGGTGT GAATACGACG GTTGATGCAG CAATTCCTCC CACAGGTACA
GATTGTATTG GAGCTGGCTT GAATAATGCC AGTTTACCGA ATAATCAACC TGCTCACTTT
AGGCGTTTAT GGGGATATGA AAACGGTCTA AGTGCTCAAA GTTTGGCATG TTTATCTGAT
GTAAGAGATA AAACGGACGT TTTACAGATT AAACGCTTTA TTGGGCCGAG TGTTGCTGCT
GGTGATGTAT CGGGATACTA CGTATCAACG ACTTCCAGTC AGGCTATTTT TTTTAATAAT
GGCACACCTT CAGCTAATTT AACCAATGGT CGAATTTGGG AGTATCAACA CCATGTGTAC
TTCATAGGAA ATGATGCTAA TGGTATCCCA GTTCTTCGAC GTAAAACTCT TACAAGTACA
GGTATGAGTA ATGATGAGCA GTTAGTTGAA GGGATTGAAA ATATAAGAGT GCTTTATGGT
TTTGATAATG ATGGTGACAG TACTCCTGAT AGCTATATGC CCGCTGCAAG TGTGACCTCT
TTAATGTGGG ACAATGAGGG TTTTCAGCGT CTAGTCGCCT TAAAAGTGCA TGTATTGATA
CGTTCGGTTC AACCGGATAG TAGCTATACC AATGAAACTC AATATCTGCT TGGGGATAAG
GTTATCAATG CGCCTAACGA TCACTTTAGG CGTAAGGTGA TGTCGACGAC AATTGTTTTA
GAAAACCCTG TACTGATAAG AAGCTAG
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| Protein sequence | MNKLAISMTK FQKGMSLVEL MVALVIGLFL SAGVFTMFSM SSSNVTTTGQ FNQIQENGRI
ALAIMERDIS QLGFMGDITG TDFVVGVNTT VDAAIPPTGT DCIGAGLNNA SLPNNQPAHF
RRLWGYENGL SAQSLACLSD VRDKTDVLQI KRFIGPSVAA GDVSGYYVST TSSQAIFFNN
GTPSANLTNG RIWEYQHHVY FIGNDANGIP VLRRKTLTST GMSNDEQLVE GIENIRVLYG
FDNDGDSTPD SYMPAASVTS LMWDNEGFQR LVALKVHVLI RSVQPDSSYT NETQYLLGDK
VINAPNDHFR RKVMSTTIVL ENPVLIRS
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