| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1129 |
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| Symbol | |
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| ID | 5611484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1349006 |
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| End bp | 1349917 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931978 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001472868 |
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| Protein GI | 157374268 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000620786 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACACT TGCCTAGTTT AAAAAACCTC TTTTATTTGG TTAACTTACA TCACGAGCAG
AACTTTAATC GGGCTGCAAA AATATGCCAT GTGAGTCAAT CGACACTCTC TAGTGGCATT
CAAAATCTGG AAGAGCAGCT AGGGCACCAG TTAATTGAAC GAGACCATAA GTCCTTCATT
TTTACGGCGA TTGGTGAAGA AGTTGTTCAA AGGTCGAGAA AGTTACTCAC CGATGTCGAT
GATCTCGTCG AGTTAGTGAA GCACCAGGGA GAGCCGATGA CCGGGGATAT CCGTCTGGGT
TGTATTCCTA CTATTGCGCC ATTTCTATTG AGTCGGGTTG TCAAACATTG CCAAAAGAGT
TATCCGGATC TGACTCTTTT TTTGAAGGAG GACACGACCG AACGCCTGCT CGATGCCCTA
GGTAAAGGGG AGTTGGATCT ACTGCTTCTG GCTCTTCCCG TCGACACGAG TGGTTATCAC
AGCATGAAGG TCGGCATCGA TCCGTTTAAA CTTGTGGTAC ATGAAGAGTT AGCGGATGAG
CTTCATGAGC CTTTAGACTT CAACTCTTTC CCTGACGAGA GTATCTTTCT CCTTCAAGCC
GAACATTGTA TTACCGGTCA TGCAATAACA GCCTGCCAGC TGGGTGATAG TGCCAAGGTT
AATCCATTTG CCGCGACAAG CCTGCATACT TTAGTGCAGA TGGTAAATAG CAAGTTGGGT
ACTACTTTTC TGCCACAGAT GGCCATCGAT GCCGGCATAT TAAATGACAC AGAGTTAAGT
GTCATGCAAC CTCCGGGTGA TGCCCCATAT AGAGATATTG GTCTGGTTTG GCGACAGACC
TCCAGCCGTA TTTTAACCTT CAGAACGTTA GGTTTAGCGA TTCAAAATCT GTTGGAAGGA
AGGGAAGAGT AG
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| Protein sequence | MKHLPSLKNL FYLVNLHHEQ NFNRAAKICH VSQSTLSSGI QNLEEQLGHQ LIERDHKSFI
FTAIGEEVVQ RSRKLLTDVD DLVELVKHQG EPMTGDIRLG CIPTIAPFLL SRVVKHCQKS
YPDLTLFLKE DTTERLLDAL GKGELDLLLL ALPVDTSGYH SMKVGIDPFK LVVHEELADE
LHEPLDFNSF PDESIFLLQA EHCITGHAIT ACQLGDSAKV NPFAATSLHT LVQMVNSKLG
TTFLPQMAID AGILNDTELS VMQPPGDAPY RDIGLVWRQT SSRILTFRTL GLAIQNLLEG
REE
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