| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1110 |
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| Symbol | |
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| ID | 5611909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1322401 |
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| End bp | 1324989 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931959 |
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| Product | Outer membrane receptor protein mostly Fe transport-like protein |
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| Protein accession | YP_001472849 |
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| Protein GI | 157374249 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATCTG ATTACCAACA CCTTTGCTCT TCTAAGATGC TAAAGAGAAG CAAAATTGCA
CAAGCCGTCC TTTTCGCTAT ATCAATAGCC CCTATCACTC TTCAAGCTGA AGAAGCAGAA
CCACCATCAG CAGACACTGA TAGCTCCTCT TTAGAAGTGA TCACGGTAAC GGCGCAGAAA
CGTGTGCAAA ATATTATGAA GGTCCCGGTA ACGGTTGGAA CAGTTTCAGA GAGCACCATA
AAAGAGAGTA GCTCTATACT CCTCAGCGAT CTGGACAAGT TTATTCCCGG ATTTGATTTT
AGCGATGCCA ACATGACACA GGGTGGCGTA ACCATGCGCG GGATCTCCAG TCCAAATATC
AGTGTCGGTG GTGACCCCTC ATCAGCCGTA TTCTTCGATG ATGTCTATAT GCCCAGAGCG
GCACAGAATG TCATCTTTTC CGACATGGAG CGCATAGAGG TATTAAAAGG CCCTCAAGGG
ACACTGTTTG GGCGTAATGC GGCCATGGGT GTCGTCAACA TGGTGCCTAA AAAACCGATA
TCCGATCTGG AGGGCTTCGT TAAAGGCAGT TACGGTACCG ATAACCTCCA GCGCTATGAG
GGGATGATTA ACGTCCCCTT AAGTGAAACA TTCTTTATTC GGGCTAACTT CTTAGCTAAC
GCCCAAGATG GAATCGTCGA AAATGTAGCA GACCCAAGCT GGAACCAGAA TAGCAAGATC
TGGGATCTCG GAGAGCGGGA CCATAAGGCC GCCAGACTCT CTATGCTCTG GAAAATCGCC
GATTCAACCA ACCTCCAGCT CTCCTACGAT TGGGACGATC TGGAGCAGGG TCCTCCGATG
GCGATAGGCA TTAGTGAATA TGCTTACAAT GGCGGGAAAA CCCCATTTGC AGATAAAGCC
GAAAATGATG TTAAAAATGG CGTCGAAGCG CGAGACATGT ATGCACTGAC CGCCAAACTT
AATCATGACT TTAACAATGA ATGGTCGATG AAATATATCC TCAGCTACCG GGATTGGGAG
ACGGTCAACC GTGAAGATGA GGATGGTACG GCTGACATCA CCCGCTACTT CGACACCTCA
AATAATGAAG ACTCGAGCAT CATCTACAGT GAGCTGCAGC TCAACTACAT CGGCGGTAGA
GTCAATGCAG TCGCAGGCTT CTCCTACTCT AAAGAGGATG TTAACCAAAG AACCGAACTT
AACCTGACAG CAGATACCGC GGCAAGAATG ATAACCTCAG AGCTTAACGA GCAGATTGGC
GGGATAATGT CGGGTCAACT CGAAGCCATG CTAGGTGGCA ACACCGACGC CCATGCGGAA
GCGGCATTTG GCCCAGGCAC GACCTTTGCC GGCGTCGTCG ACAGCATCTA CTCCTCTTCC
GGGTTCCCGA TGGATCACCT CTGGAACGCC AATGAGTGGG CCAATGTTCT GAACGTACTC
GAGTTCCCCG GCTCCCCCTA CTCACCAGAG ATGGTCGAAG CTACGGGCGA TATGACCTAT
GACGCCGTAT CAATGGCCAT GGGGATCCCG GAAATTTTTG GGCCAAGCTT TGCCGGTCAG
TGGTGGCAGG AGAATATCTA TAACAGTGGT GATTTTACGA ACTGGGGAGT CTTTGCCGAT
GTCGATTATG CCCTCACCGA CAAGTGGAAT ATCATAGGAG GTCTGCGCTA TTCCAAAGAT
CAAAAAGAGT TTAGCTGGTA TATCCCTAAA ACCACCTTCG CCCAGGTGCG TGAAGGGGTC
AGTAATATCT TGTTCGATGA GGTGGATATG AGCAGCTCTG ACTCATGGGA TGAGATAACC
GGGCGCTTGG TGACCAGCTA CCAGCTCACC GACAGGCATA TGGTATTCGC CTCATACTCA
ACGGGCTATA AATCGGGTGG CTATGACTCA CTGCAACCCA GTACAGAGTC ATTCGCACCG
GAGAACACGA CTAACTATGA GGCAGGTTAC AAAGGGATCA TCTCTGACTC CCTGATAGCC
AACATCAGCG CCTACTATCT GGAGGTCGAT GGTCTTCAAA CGACGGTATC TTCACAGCGG
CCTGACAGTA CAACGGCTGT GCCCTTGATC ATCAACCTGG ATAAGGAGAT AACAGGCGTA
GAGTTAGATC TTCGCTGGAT GGCAACCGAT AACCTGACAC TCGGTGTCGT TAGCGAAGTA
CGAGCCACTG ACACTTATAA CCCTGAGTTT TACAACTCGG TTGGCGAACT TGTACCAGCT
GAAACACGCT CCGAAGATCC CGCTTTAAAC TACACATTAA CCTTAGACTG GATGCCAGAC
TTTGGAGTAG GAACCACCAA CCTACATCTG GACTATCAGT TTGTTGAAAA TACCAACGCT
GACGAAGTGG GACTGGAGGA TTATAAGAAA GCGATACCCG AATATTTCAA AGATATGAAG
AATCTCAGTG CACGACTCTC ATGGACTGAC GACAGTGAAA GTCTCGAGAT CGGACTCTGG
GGACGCAACC TGCTCGACGA GAGATATATG GAGTCACTGG GCGGCTTAGC CGTGGATTAT
CTGGGTACAC CACACGGTAG AGTTAACCGT GGATTAGAGA CAGGAATTGA TCTGCAGTAC
ACATTCTAA
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| Protein sequence | MRSDYQHLCS SKMLKRSKIA QAVLFAISIA PITLQAEEAE PPSADTDSSS LEVITVTAQK
RVQNIMKVPV TVGTVSESTI KESSSILLSD LDKFIPGFDF SDANMTQGGV TMRGISSPNI
SVGGDPSSAV FFDDVYMPRA AQNVIFSDME RIEVLKGPQG TLFGRNAAMG VVNMVPKKPI
SDLEGFVKGS YGTDNLQRYE GMINVPLSET FFIRANFLAN AQDGIVENVA DPSWNQNSKI
WDLGERDHKA ARLSMLWKIA DSTNLQLSYD WDDLEQGPPM AIGISEYAYN GGKTPFADKA
ENDVKNGVEA RDMYALTAKL NHDFNNEWSM KYILSYRDWE TVNREDEDGT ADITRYFDTS
NNEDSSIIYS ELQLNYIGGR VNAVAGFSYS KEDVNQRTEL NLTADTAARM ITSELNEQIG
GIMSGQLEAM LGGNTDAHAE AAFGPGTTFA GVVDSIYSSS GFPMDHLWNA NEWANVLNVL
EFPGSPYSPE MVEATGDMTY DAVSMAMGIP EIFGPSFAGQ WWQENIYNSG DFTNWGVFAD
VDYALTDKWN IIGGLRYSKD QKEFSWYIPK TTFAQVREGV SNILFDEVDM SSSDSWDEIT
GRLVTSYQLT DRHMVFASYS TGYKSGGYDS LQPSTESFAP ENTTNYEAGY KGIISDSLIA
NISAYYLEVD GLQTTVSSQR PDSTTAVPLI INLDKEITGV ELDLRWMATD NLTLGVVSEV
RATDTYNPEF YNSVGELVPA ETRSEDPALN YTLTLDWMPD FGVGTTNLHL DYQFVENTNA
DEVGLEDYKK AIPEYFKDMK NLSARLSWTD DSESLEIGLW GRNLLDERYM ESLGGLAVDY
LGTPHGRVNR GLETGIDLQY TF
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